B9NK61_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0005s15100 T04027_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s15100.1 CCCH ZF 263 289
POPTR_0005s15100.1 CCCH ZF 301 327

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9PD44_POPTR Populus trichocarpa POPTR_0004s09410 N 0.963
cassava10040.m1 Manihot esculenta cassava10040.m1 N 0.889
MDP0000217945 Malus x domestica MDP0000217945 N 0.870
MDP0000941410 Malus x domestica MDP0000941410 N 0.870
cassava2640.m1 Manihot esculenta cassava2640.m1 N 0.870
29586.m000617 Ricinus communis 29586.m000617 N 0.870
MDP0000311868 Malus x domestica MDP0000311868 N 0.870
AT1G68200 Arabidopsis thaliana AT1G68200-TAIR-G N 0.852
GRMZM2G149347 Zea mays GRMZM2G149347 N 0.852
XM_002887123.1 Arabidopsis lyrata fgenesh2_kg.2__1068__AT1G68200.1 N 0.852
AC235678_14 Medicago truncatula AC235678_14 N 0.852
ppa018479m Prunus persica ppa018479m N 0.852
mgf020324m Mimulus guttatus mgf020324m N 0.852
29660.m000770 Ricinus communis 29660.m000770 N 0.852
Glyma10g41530.1 Glycine max Glyma10g41530.1 N 0.852
Glyma20g25710.1 Glycine max Glyma20g25710.1 N 0.852
GSVIVG00030969001 Vitis vinifera GSVIVG00030969001 N 0.833
SB09G029330 Sorghum bicolor Sb09g029330 N 0.833
cassava40081.m1 Manihot esculenta cassava40081.m1 N 0.833
BGIOSIBCE020132 Oryza indica BGIOSIBCE020132 N 0.833
Cucsa.280660 Cucumis sativus Cucsa.280660 N 0.833
mgf026476m Mimulus guttatus mgf026476m N 0.833
LOC_Os05g50080 Oryza sativa LOC_Os05g50080 N 0.833
BGIOSIBCE002955 Oryza indica BGIOSIBCE002955 N 0.815
LOC_Os01g45730 Oryza sativa LOC_Os01g45730 N 0.815
GSVIVG00011819001 Vitis vinifera GSVIVG00011819001 N 0.815
GRMZM2G157927 Zea mays GRMZM2G157927 N 0.815
Cucsa.087930 Cucumis sativus Cucsa.087930 N 0.815
mgf021134m Mimulus guttatus mgf021134m N 0.815
GRMZM2G116416 Zea mays GRMZM2G116416 N 0.815
B9HWC0_POPTR Populus trichocarpa POPTR_0010s12860 N 0.815
chr5.CM0328.460.nd Lotus japonicus chr5.CM0328.460.nd N 0.815
XM_002888502.1 Arabidopsis lyrata fgenesh2_kg.2__907__AT1G66810.1 N 0.796
MDP0000251967 Malus x domestica MDP0000251967 N 0.796
ppa017322m Prunus persica ppa017322m N 0.796
MDP0000313949 Malus x domestica MDP0000313949 N 0.796
PK08294.1 Cannabis sativa PK08294.1 N 0.796
PK28804.1 Cannabis sativa PK28804.1 N 0.796
BRADI2G45090 Brachypodium distachyon BRADI2G45090 N 0.796
AT1G66810 Arabidopsis thaliana AT1G66810-TAIR-G N 0.778
BRADI2G15670 Brachypodium distachyon BRADI2G15670 N 0.759