Cucsa.087930 (Cucumis sativus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Cucsa.087930 T04825_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.087930.1 CCCH ZF 244 270
Cucsa.087930.1 CCCH ZF 282 308

Links

Other CCCH ZF family RBPs
Other Cucumis sativus RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9PD44_POPTR Populus trichocarpa POPTR_0004s09410 N 0.852
cassava10040.m1 Manihot esculenta cassava10040.m1 N 0.852
cassava2640.m1 Manihot esculenta cassava2640.m1 N 0.833
29586.m000617 Ricinus communis 29586.m000617 N 0.833
XM_002887123.1 Arabidopsis lyrata fgenesh2_kg.2__1068__AT1G68200.1 N 0.833
AT1G68200 Arabidopsis thaliana AT1G68200-TAIR-G N 0.833
PK28804.1 Cannabis sativa PK28804.1 N 0.815
ppa017322m Prunus persica ppa017322m N 0.815
B9NK61_POPTR Populus trichocarpa POPTR_0005s15100 N 0.815
Glyma20g25710.1 Glycine max Glyma20g25710.1 N 0.796
Cucsa.280660 Cucumis sativus Cucsa.280660 N 0.796
GRMZM2G116416 Zea mays GRMZM2G116416 N 0.796
GSVIVG00011819001 Vitis vinifera GSVIVG00011819001 N 0.796
Glyma10g41530.1 Glycine max Glyma10g41530.1 N 0.796
LOC_Os01g45730 Oryza sativa LOC_Os01g45730 N 0.796
GSVIVG00030969001 Vitis vinifera GSVIVG00030969001 N 0.796
cassava40081.m1 Manihot esculenta cassava40081.m1 N 0.796
BGIOSIBCE002955 Oryza indica BGIOSIBCE002955 N 0.796
MDP0000941410 Malus x domestica MDP0000941410 N 0.796
GRMZM2G157927 Zea mays GRMZM2G157927 N 0.796
ppa018479m Prunus persica ppa018479m N 0.796
AC235678_14 Medicago truncatula AC235678_14 N 0.796
chr5.CM0328.460.nd Lotus japonicus chr5.CM0328.460.nd N 0.778
GRMZM2G149347 Zea mays GRMZM2G149347 N 0.778
B9HWC0_POPTR Populus trichocarpa POPTR_0010s12860 N 0.778
MDP0000217945 Malus x domestica MDP0000217945 N 0.778
LOC_Os05g50080 Oryza sativa LOC_Os05g50080 N 0.778
mgf026476m Mimulus guttatus mgf026476m N 0.778
MDP0000313949 Malus x domestica MDP0000313949 N 0.778
29660.m000770 Ricinus communis 29660.m000770 N 0.778
BGIOSIBCE020132 Oryza indica BGIOSIBCE020132 N 0.778
MDP0000311868 Malus x domestica MDP0000311868 N 0.778
SB09G029330 Sorghum bicolor Sb09g029330 N 0.778
MDP0000251967 Malus x domestica MDP0000251967 N 0.778
BRADI2G45090 Brachypodium distachyon BRADI2G45090 N 0.759
mgf021134m Mimulus guttatus mgf021134m N 0.759
mgf020324m Mimulus guttatus mgf020324m N 0.741
XM_002888502.1 Arabidopsis lyrata fgenesh2_kg.2__907__AT1G66810.1 N 0.741
PK08294.1 Cannabis sativa PK08294.1 N 0.741
AT1G66810 Arabidopsis thaliana AT1G66810-TAIR-G N 0.722
BRADI1G64800 Brachypodium distachyon BRADI1G64800 N 0.704
BRADI2G15670 Brachypodium distachyon BRADI2G15670 N 0.704
LOC_Os03g18950 Oryza sativa LOC_Os03g18950 N 0.704