B9HWC0_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0010s12860 T04056_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s12860.1 CCCH ZF 174 200
POPTR_0010s12860.1 CCCH ZF 212 238

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.280660 Cucumis sativus Cucsa.280660 N 0.889
Glyma10g41530.1 Glycine max Glyma10g41530.1 N 0.889
AC235678_14 Medicago truncatula AC235678_14 N 0.889
chr5.CM0328.460.nd Lotus japonicus chr5.CM0328.460.nd N 0.889
cassava40081.m1 Manihot esculenta cassava40081.m1 N 0.889
Glyma20g25710.1 Glycine max Glyma20g25710.1 N 0.889
GSVIVG00011819001 Vitis vinifera GSVIVG00011819001 N 0.870
ppa017322m Prunus persica ppa017322m N 0.870
B9PD44_POPTR Populus trichocarpa POPTR_0004s09410 N 0.852
AT1G68200 Arabidopsis thaliana AT1G68200-TAIR-G N 0.852
29660.m000770 Ricinus communis 29660.m000770 N 0.852
MDP0000313949 Malus x domestica MDP0000313949 N 0.852
mgf026476m Mimulus guttatus mgf026476m N 0.852
XM_002887123.1 Arabidopsis lyrata fgenesh2_kg.2__1068__AT1G68200.1 N 0.852
PK28804.1 Cannabis sativa PK28804.1 N 0.833
MDP0000251967 Malus x domestica MDP0000251967 N 0.833
GSVIVG00030969001 Vitis vinifera GSVIVG00030969001 N 0.833
cassava2640.m1 Manihot esculenta cassava2640.m1 N 0.833
cassava10040.m1 Manihot esculenta cassava10040.m1 N 0.833
LOC_Os05g50080 Oryza sativa LOC_Os05g50080 N 0.815
BRADI2G45090 Brachypodium distachyon BRADI2G45090 N 0.815
BRADI2G15670 Brachypodium distachyon BRADI2G15670 N 0.815
BGIOSIBCE020132 Oryza indica BGIOSIBCE020132 N 0.815
B9NK61_POPTR Populus trichocarpa POPTR_0005s15100 N 0.815
mgf020324m Mimulus guttatus mgf020324m N 0.815
29586.m000617 Ricinus communis 29586.m000617 N 0.815
mgf021134m Mimulus guttatus mgf021134m N 0.815
GRMZM2G149347 Zea mays GRMZM2G149347 N 0.815
LOC_Os01g45730 Oryza sativa LOC_Os01g45730 N 0.796
XM_002888502.1 Arabidopsis lyrata fgenesh2_kg.2__907__AT1G66810.1 N 0.796
SB09G029330 Sorghum bicolor Sb09g029330 N 0.796
GRMZM2G157927 Zea mays GRMZM2G157927 N 0.796
AT1G66810 Arabidopsis thaliana AT1G66810-TAIR-G N 0.796
GRMZM2G116416 Zea mays GRMZM2G116416 N 0.796
BGIOSIBCE002955 Oryza indica BGIOSIBCE002955 N 0.796
MDP0000941410 Malus x domestica MDP0000941410 N 0.778
Cucsa.087930 Cucumis sativus Cucsa.087930 N 0.778
MDP0000311868 Malus x domestica MDP0000311868 N 0.759
MDP0000217945 Malus x domestica MDP0000217945 N 0.759
ppa018479m Prunus persica ppa018479m N 0.759
PK08294.1 Cannabis sativa PK08294.1 N 0.759