MDP0000251967 (Malus x domestica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 MDP0000251967 T06342_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000251967 CCCH ZF 249 275
MDP0000251967 CCCH ZF 287 313

Links

Other CCCH ZF family RBPs
Other Malus x domestica RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000313949 Malus x domestica MDP0000313949 N 0.963
chr5.CM0328.460.nd Lotus japonicus chr5.CM0328.460.nd N 0.944
Glyma10g41530.1 Glycine max Glyma10g41530.1 N 0.926
Cucsa.280660 Cucumis sativus Cucsa.280660 N 0.926
Glyma20g25710.1 Glycine max Glyma20g25710.1 N 0.926
AC235678_14 Medicago truncatula AC235678_14 N 0.926
ppa017322m Prunus persica ppa017322m N 0.907
GSVIVG00011819001 Vitis vinifera GSVIVG00011819001 N 0.889
cassava40081.m1 Manihot esculenta cassava40081.m1 N 0.870
XM_002887123.1 Arabidopsis lyrata fgenesh2_kg.2__1068__AT1G68200.1 N 0.870
AT1G68200 Arabidopsis thaliana AT1G68200-TAIR-G N 0.870
cassava2640.m1 Manihot esculenta cassava2640.m1 N 0.852
mgf021134m Mimulus guttatus mgf021134m N 0.852
GSVIVG00030969001 Vitis vinifera GSVIVG00030969001 N 0.852
29660.m000770 Ricinus communis 29660.m000770 N 0.852
cassava10040.m1 Manihot esculenta cassava10040.m1 N 0.852
29586.m000617 Ricinus communis 29586.m000617 N 0.852
SB09G029330 Sorghum bicolor Sb09g029330 N 0.833
B9HWC0_POPTR Populus trichocarpa POPTR_0010s12860 N 0.833
mgf026476m Mimulus guttatus mgf026476m N 0.833
PK08294.1 Cannabis sativa PK08294.1 N 0.833
GRMZM2G149347 Zea mays GRMZM2G149347 N 0.833
BRADI2G45090 Brachypodium distachyon BRADI2G45090 N 0.833
B9PD44_POPTR Populus trichocarpa POPTR_0004s09410 N 0.833
XM_002888502.1 Arabidopsis lyrata fgenesh2_kg.2__907__AT1G66810.1 N 0.815
GRMZM2G157927 Zea mays GRMZM2G157927 N 0.815
BGIOSIBCE002955 Oryza indica BGIOSIBCE002955 N 0.815
GRMZM2G116416 Zea mays GRMZM2G116416 N 0.815
LOC_Os01g45730 Oryza sativa LOC_Os01g45730 N 0.815
mgf020324m Mimulus guttatus mgf020324m N 0.796
B9NK61_POPTR Populus trichocarpa POPTR_0005s15100 N 0.796
PK28804.1 Cannabis sativa PK28804.1 N 0.796
BGIOSIBCE020132 Oryza indica BGIOSIBCE020132 N 0.796
AT1G66810 Arabidopsis thaliana AT1G66810-TAIR-G N 0.796
LOC_Os05g50080 Oryza sativa LOC_Os05g50080 N 0.796
BRADI2G15670 Brachypodium distachyon BRADI2G15670 N 0.778
Cucsa.087930 Cucumis sativus Cucsa.087930 N 0.778
MDP0000941410 Malus x domestica MDP0000941410 N 0.759
MDP0000217945 Malus x domestica MDP0000217945 N 0.741
MDP0000311868 Malus x domestica MDP0000311868 N 0.741
ppa018479m Prunus persica ppa018479m N 0.741
Medtr5g097070 Medicago truncatula Medtr5g097070 N 0.722