cassava26644.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava26644.m1 T04773_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava26644.m1 CCCH ZF 186 205

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PGTG_01325 Puccinia graminis PGTG_01325 N 0.773
PTTG_01394 Puccinia triticina PTTG_01394 N 0.773
fgenesh1_pg.C_scaffold_102000045 Daphnia pulex fgenesh1_pg.C_scaffold_102000045 N 0.750
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.741
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.741
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.704
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.704
PK05761.1 Cannabis sativa PK05761.1 N 0.704
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.704
GSVIVG00027082001 Vitis vinifera GSVIVG00027082001 N 0.704
29733.m000748 Ricinus communis 29733.m000748 N 0.704
29733.m000763 Ricinus communis 29733.m000763 N 0.704
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.704
SB04G009270 Sorghum bicolor Sb04g009270 N 0.704
ppa009728m Prunus persica ppa009728m N 0.704
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.704
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.704
MDP0000202598 Malus x domestica MDP0000202598 N 0.704
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.704
mgf009866m Mimulus guttatus mgf009866m N 0.704
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.704
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.704
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.704
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.704
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.704
estExt_fgeneshCV_pg.C_10417 Chlorella vulgaris estExt_fgeneshCV_pg.C_10417 N 0.704
MDP0000182690 Malus x domestica MDP0000182690 N 0.704
estExt_fgenesh1_pm.C_10087 Coccomyxa C 169 estExt_fgenesh1_pm.C_10087 N 0.704
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.704
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.704
MDP0000274000 Malus x domestica MDP0000274000 N 0.704