e_gw1.32.54.1 (Fragilariopsis cylindrus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 e_gw1.32.54.1 T04908_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.32.54.1 CCCH ZF 37 63

Links

Other CCCH ZF family RBPs
Other Fragilariopsis cylindrus RBPs

239 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
THAPSDRAFT_25179 Thalassiosira pseudonana Thaps25179 N 0.963
PHATRDRAFT_12516 Phaeodactylum tricornutum Phatr12516 N 0.963
estExt_Genewise1.C_340021 Melampsora laricis populina estExt_Genewise1.C_340021 N 0.889
XP_002169878.1 Hydra magnipapillata XP_002169878.1 N 0.852
RNF113A Microcebus murinus ENSMICG00000001750 N 0.852
ENSMLUG00000010856 Myotis lucifugus ENSMLUG00000010856 N 0.852
TP01_0812 Theileria parva TP01_0812 N 0.852
TA05795 Theileria annulata TA05795 N 0.852
AMAG_06522 Allomyces macrogynus AMAG_06522 N 0.852
ENSMGAG00000001753 Meleagris gallopavo ENSMGAG00000001753 N 0.852
AAH97882 Xenopus laevis AAH97882 N 0.852
AAR97523 Xenopus laevis AAR97523 N 0.852
ENSMEUG00000001855 Macropus eugenii ENSMEUG00000001855 N 0.852
RNF113A Macaca mulatta ENSMMUG00000020223 N 0.852
AAI33788 Xenopus laevis AAI33788 N 0.852
RNF113B Macaca mulatta ENSMMUG00000022250 N 0.852
RNF113B Pan troglodytes ENSPTRG00000005987 N 0.852
ENSPPYG00000020676 Pongo pygmaeus ENSPPYG00000020676 N 0.852
amel4_ncbi_hmm8953 Apis mellifera amel4_ncbi_hmm8953 N 0.852
Rnf113a1 Rattus norvegicus ENSRNOG00000034040 N 0.852
estExt_fgenesh2_pg.C_30366 Heterobasidion annosum estExt_fgenesh2_pg.C_30366 N 0.852
ENSPPYG00000005460 Pongo pygmaeus ENSPPYG00000005460 N 0.852
RNF113A Procavia capensis ENSPCAG00000014633 N 0.852
ENSOANG00000002592 Ornithorhynchus anatinus ENSOANG00000002592 N 0.852
Rnf113a1 Mus musculus ENSMUSG00000036537 N 0.852
RNF113A Oryctolagus cuniculus ENSOCUG00000016207 N 0.852
RNF113A Otolemur garnettii ENSOGAG00000016171 N 0.852
Q67EQ7_ORYLA Oryzias latipes ENSORLG00000002442 N 0.852
AMAG_15438 Allomyces macrogynus AMAG_15438 N 0.852
RNF113B Gorilla gorilla ENSGGOG00000023052 N 0.852
XM_538154.2 Canis familiaris ENSCAFG00000018430 N 0.852
PTSG_02658 Salpingoeca rosetta PTSG_02658 N 0.852
NP_001027830.1 Ciona intestinalis ENSCING00000009197 N 0.852
RNF113B Callithrix jacchus ENSCJAG00000004501 N 0.852
LOC100388689 Callithrix jacchus ENSCJAG00000022327 N 0.852
LOC518027 Bos taurus ENSBTAG00000008684 N 0.852
R113A_BOVIN Bos taurus ENSBTAG00000006034 N 0.852
DGIL_AUG5s12567g4t1 Acyrtosiphon pisum DGIL_AUG5s12567g4t1 N 0.852
nasonia_NCBI_hmm132664 Nasonia vitripennis nasonia_NCBI_hmm132664 N 0.852
e_gw1.8.388.1 Schizophyllum commune e_gw1.8.388.1 N 0.852
ENSACAG00000012485 Anolis carolinensis ENSACAG00000012485 N 0.852
ENSCSAVG00000006210 Ciona savignyi ENSCSAVG00000006210 N 0.852
rnf113a Danio rerio ENSDARG00000037930 N 0.852
RNF113B Gasterosteus aculeatus ENSGACG00000009738 N 0.852
CC1G_03236 Coprinopsis cinerea CC1G_03236 N 0.852
Q67ER3_CHICK Gallus gallus ENSGALG00000000538 N 0.852
RNF113A Gorilla gorilla ENSGGOG00000002324 N 0.852
ENSSARG00000010436 Sorex araneus ENSSARG00000010436 N 0.852
RNF113B Homo sapiens ENSG00000139797 N 0.852
RNF113A Homo sapiens ENSG00000125352 N 0.852
RNF113A Dasypus novemcinctus ENSDNOG00000015321 N 0.852
LOC100058519 Equus caballus ENSECAG00000003934 N 0.852
ENSECAG00000004638 Equus caballus ENSECAG00000004638 N 0.852
RNF113A Echinops telfairi ENSETEG00000018346 N 0.852
RNF113A Loxodonta africana ENSLAFG00000013906 N 0.852
RNF113A Pan troglodytes ENSPTRG00000022231 N 0.852
PBANKA_130770 Plasmodium berghei PBANKA_130770 N 0.852
PCHAS_131090 Plasmodium chabaudi PCHAS_131090 N 0.852
PHUM169980 Pediculus humanus PHUM169980 N 0.852
gw1.2.524.1 Monosiga brevicollis gw1.2.524.1 N 0.852
rnf113a Xenopus tropicalis ENSXETG00000002042 N 0.852
PF14_0416 Plasmodium falciparum PF14_0416 N 0.852
estExt_GenewiseH_1.C_3140043 Nematostella vectensis estExt_GenewiseH_1.C_3140043 N 0.852
estExt_fgenesh1_pg.C_5430007 Capitella teleta estExt_fgenesh1_pg.C_5430007 N 0.852
Aqu1.217710 Amphimedon queenslandica Aqu1.217710 N 0.852
estExt_Genewise1.C_sca_120492 Lottia gigantea estExt_Genewise1.C_sca_120492 N 0.852
PY01907 Plasmodium yoelii PY01907 N 0.852
PredSwiss_CON4272.1 Pneumocystis carinii PredSwiss_CON4272.1 N 0.852
gw1.20.96.1 Phycomyces blakesleeanus gw1.20.96.1 N 0.852
RNF113B Takifugu rubripes ENSTRUG00000011142 N 0.852
RNF113A Tupaia belangeri ENSTBEG00000012687 N 0.852
BGIBMGA000186 Bombyx mori BGIBMGA000186 N 0.852
ENSSSCG00000012616 Sus scrofa ENSSSCG00000012616 N 0.852
ENSSSCG00000012610 Sus scrofa ENSSSCG00000012610 N 0.852
RNF113A Taeniopygia guttata ENSTGUG00000001947 N 0.852
RNF113A Vicugna pacos ENSVPAG00000004521 N 0.852
RNF113B Tetraodon nigroviridis ENSTNIG00000014938 N 0.852
Ame_R010811 Ailuropoda melanoleuca Ame_R010811 N 0.852
PKH_126250 Plasmodium knowlesi PKH_126250 N 0.815
FOXG_03625 Fusarium oxysporum FOXG_03625 N 0.815
CMU_031370 Cryptosporidium muris CMU_031370 N 0.815
fgenesh1_pg.C_scaffold_13000094 Phytophthora ramorum fgenesh1_pg.C_scaffold_13000094 N 0.815
PVX_118300 Plasmodium vivax PVX_118300 N 0.815
RNF113A Choloepus hoffmanni ENSCHOG00000008711 N 0.815
AAEL001778 Aedes aegypti AAEL001778 N 0.815
UM05163 Ustilago maydis UM05163 N 0.815
estExt_fgenesh2_kg.C_62064 Serpula lacrymans estExt_fgenesh2_kg.C_62064 N 0.815
AGAP007068 Anopheles gambiae AGAP007068 N 0.815
CPIJ004936 Culex quinquefasciatus CPIJ004936 N 0.815
e_gw1.5.501.1 Pleurotus ostreatus e_gw1.5.501.1 N 0.815
estExt_fgenesh2_pg.C_50080 Agaricus bisporus estExt_fgenesh2_pg.C_50080 N 0.815
185736 Helobdella robusta 185736 N 0.815
estExt_GeneWisePlus_human.C_50103 Laccaria bicolor estExt_GeneWisePlus_human.C_50103 N 0.815
CpipJ_CPIJ004936 Culex pipiens CpipJ_CPIJ004936 N 0.815
GF17636 Drosophila ananassae FBgn0094654 N 0.815
GG23724 Drosophila erecta FBgn0115865 N 0.815
PASA_GEN_19100012 Daphnia pulex PASA_GEN_19100012 N 0.815
GI22714 Drosophila mojavensis FBgn0145441 N 0.815
GK22373 Drosophila willistoni FBgn0067112 N 0.815
Smp_033590 Schistosoma mansoni Smp_033590 N 0.815
CG4973 Drosophila melanogaster FBgn0038772 N 0.815
GA18564-RA Drosophila pseudoobscura FBgn0064425 N 0.815
ENSMLUG00000016812 Myotis lucifugus ENSMLUG00000016812 N 0.815
gww2.6.423.1 Phanerochaete chrysosporium gww2.6.423.1 N 0.815
GH22886 Drosophila grimshawi FBgn0130343 N 0.815
GL12088 Drosophila persimilis FBgn0149696 N 0.815
estExt_fgenesh1_pm.C_170027 Phytophthora capsici estExt_fgenesh1_pm.C_170027 N 0.815
GD19337 Drosophila simulans FBgn0190839 N 0.815
GE25648 Drosophila yakuba FBgn0242710 N 0.815
GM17684 Drosophila sechellia FBgn0172592 N 0.815
ISCW023200 Ixodes scapularis ISCW023200 N 0.778
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.778
cgd6_3300 Cryptosporidium parvum cgd6_3300 N 0.778
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.778
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.778
e_gw1.12.147.1 Ostreococcus RCC809 e_gw1.12.147.1 N 0.778
GSVIVG00027082001 Vitis vinifera GSVIVG00027082001 N 0.778
XM_537309.2 Canis familiaris ENSCAFG00000018373 N 0.778
Chro.60383 Cryptosporidium hominis Chro.60383 N 0.778
GJ23438 Drosophila virilis FBgn0210538 N 0.778
4131 Aureococcus anophagefferens 4131 N 0.778
An02g05190 Aspergillus niger CADANGAG00002035 N 0.778
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.778
TESG_00049 Trichophyton tonsurans TESG_00049 N 0.778
ARB_03970 Arthroderma benhamiae ARB_03970 N 0.778
GSTUMT00004845001 Tuber melanosporum GSTUMT00004845001 N 0.778
estExt_fgeneshCV_pg.C_10417 Chlorella vulgaris estExt_fgeneshCV_pg.C_10417 N 0.778
estExt_fgenesh1_pm.C_10087 Coccomyxa C 169 estExt_fgenesh1_pm.C_10087 N 0.778
CAOG_06860 Capsaspora owczarzaki CAOG_06860 N 0.778
FGSG_08901 Fusarium graminearum FGSG_08901 N 0.778
SNOG_16397 Stagonospora nodorum SNOG_16397 N 0.778
PITG_04905 Phytophthora infestans PITG_04905 N 0.778
MGYG_03604 Microsporum gypseum MGYG_03604 N 0.778
e_gw1.00866.533.1 Aspergillus carbonarius e_gw1.00866.533.1 N 0.778
EDO07311.1 Babesia bovis EDO07311.1 N 0.778
gw1.63.49.1 Postia placenta gw1.63.49.1 N 0.778
gw1.1.878.1 Batrachochytrium dendrobatidis gw1.1.878.1 N 0.778
fgenesh2_pg.C_scaffold_6000249 Selaginella moellendorfii fgenesh2_pg.C_scaffold_6000249 N 0.778
fgenesh1_pg.sca_2_chr3_3_0000871 Nectria haematococca fgenesh1_pg.sca_2_chr3_3_0000871 N 0.778
gw1.9.174.1 Postia placenta gw1.9.174.1 N 0.778
gwEuk.12.222.1 Ostreococcus lucimarinus gwEuk.12.222.1 N 0.778
EFA78387.1 Polysphondylium pallidum EFA78387.1 N 0.778
EAT76222.1 Phaeosphaeria nodorum EAT76222.1 N 0.778
s_444298 Phytophthora sojae s_444298 N 0.778
SOCG_00229 Schizosaccharomyces octosporus SOCG_00229 N 0.778
fgenesh1_pg.C_Chr_12.0001000110 Ostreococcus tauri fgenesh1_pg.C_Chr_12.0001000110 N 0.778
SPPG_00604 Spizellomyces punctatus SPPG_00604 N 0.778
TEQG_05573 Trichophyton equinum TEQG_05573 N 0.778
SPOG_02814 Schizosaccharomyces cryophilus SPOG_02814 N 0.778
TRV_01821 Trichophyton verrucosum TRV_01821 N 0.778
TERG_03941 Trichophyton rubrum TERG_03941 N 0.778
estExt_fgenesh1_pm.C_110126 Cryphonectria parasitica estExt_fgenesh1_pm.C_110126 N 0.741
VDAG_02435 Verticillium dahliae VDAG_02435 N 0.741
SPRG_10807 Saprolegnia parasitica SPRG_10807 N 0.741
fgenesh2_pg.scaffold_2135000001 Branchiostoma floridae fgenesh2_pg.scaffold_2135000001 N 0.741
WUBG_06682 Wuchereria bancrofti WUBG_06682 N 0.741
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.741
SB04G009270 Sorghum bicolor Sb04g009270 N 0.741
TGGT1_081710 Toxoplasma gondii TGGT1_081710 N 0.741
KLTH0E08580g Kluyveromyces thermotolerans KLTH0E08580g N 0.741
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.741
PK05761.1 Cannabis sativa PK05761.1 N 0.741
NCLIV_046420 Neospora caninum NCLIV_046420 N 0.741
A7TKV6_VANPO Vanderwaltozyma polyspora A7TKV6_VANPO N 0.741
SPRG_14175 Saprolegnia parasitica SPRG_14175 N 0.741
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.741
mgf009866m Mimulus guttatus mgf009866m N 0.741
SS1G_11427 Sclerotinia sclerotiorum SS1G_11427 N 0.741
fgeneshDP_pg.C_scaffold_172000011 Dictyostelium purpureum fgeneshDP_pg.C_scaffold_172000011 N 0.741
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.741
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.741
fgenesh2_pm.scaffold_144000004 Branchiostoma floridae fgenesh2_pm.scaffold_144000004 N 0.741
MDP0000182690 Malus x domestica MDP0000182690 N 0.741
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.741
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.741
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.741
MDP0000202598 Malus x domestica MDP0000202598 N 0.741
cwf24 Schizosaccharomyces pombe SPBC13E7.02 N 0.741
LOAG_01140 Loa loa LOAG_01140 N 0.741
GLRG_04651 Colletotrichum graminicola GLRG_04651 N 0.741
CPSG_00950 Coccidioides posadasii CPSG_00950 N 0.741
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.741
CIMG_06140 Coccidioides immitis CIMG_06140 N 0.741
MCYG_07006 Microsporum canis MCYG_07006 N 0.741
MGG_02960 Magnaporthe oryzae MGG_02960 N 0.741
PTRG_10816 Pyrenophora tritici repentis PTRG_10816 N 0.741
SJAG_03112 Schizosaccharomyces japonicus SJAG_03112 N 0.741
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.741
PABG_00271 Paracoccidioides brasiliensis PABG_00271 N 0.741
gw1.1.1618.1 Thielavia terrestris gw1.1.1618.1 N 0.741
estExt_Genewise1.C_10555 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10555 N 0.741
Bm1_06930 Brugia malayi Bm1_06930 N 0.741
ppa009728m Prunus persica ppa009728m N 0.741
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.741
TGVEG_067620 Toxoplasma gondii TGVEG_067620 N 0.741
TGME49_026560 Toxoplasma gondii TGME49_026560 N 0.741
MDP0000274000 Malus x domestica MDP0000274000 N 0.741
XP_001196290.1 Strongylocentrotus purpuratus XP_001196290.1 N 0.741
29733.m000748 Ricinus communis 29733.m000748 N 0.741
BC1G_08876 Botrytis cinerea BC1G_08876 N 0.741
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.741
29733.m000763 Ricinus communis 29733.m000763 N 0.741
YALI0C22484g Yarrowia lipolytica YALI0C22484g N 0.741
XP_783481.2 Strongylocentrotus purpuratus XP_783481.2 N 0.741
gw1.2.379.1 Trichoderma atroviride gw1.2.379.1 N 0.741
estExt_Genewise1Plus.C_80076 Volvox carteri estExt_Genewise1Plus.C_80076 N 0.704
e_gw1.1.717.1 Myceliophthora thermophila e_gw1.1.717.1 N 0.704
estExt_fgenesh1_pm.C_chr_30248 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_30248 N 0.704
estExt_fgenesh2_pg.C_20402 Neurospora discreta estExt_fgenesh2_pg.C_20402 N 0.704
estExt_Genewise1.C_11309 Trichoderma virens estExt_Genewise1.C_11309 N 0.704
estExt_gwp_1W.C_30096 Chlamydomonas reinhardtii estExt_gwp_1W.C_30096 N 0.704
fgeneshNG_pg.scaffold_2000259 Naegleria gruberi fgeneshNG_pg.scaffold_2000259 N 0.704
Medtr8g068390 Medicago truncatula Medtr8g068390 N 0.704
SAKL0H22880g Lachancea kluyveri SAKL0H22880g N 0.704
XP_002490540.1 Pichia pastoris XP_002490540.1 N 0.704
Pa_1_20620 Podospora anserina Pa_1_20620 N 0.704
Minc18333 Meloidogyne incognita Minc18333 N 0.704
LjSGA_011721.2 Lotus japonicus LjSGA_011721.2 N 0.704
CBN12332 Caenorhabditis brenneri CBN12332 N 0.704
BDBG_04068 Blastomyces dermatitidis BDBG_04068 N 0.704
CRE04837 Caenorhabditis remanei CRE04837 N 0.704
rnf113 Dictyostelium discoideum DDB_G0267870 N 0.704
HCAG_02941 Histoplasma capsulatum HCAG_02941 N 0.704
CHGG_06589 Chaetomium globosum CHGG_06589 N 0.704
CJA02847 Caenorhabditis japonica CJA02847 N 0.704
Kwal_17638 Kluyveromyces waltii Kwal_17638 N 0.704
CBG18314 Caenorhabditis briggsae CBG18314 N 0.704
gw1.27.284.1 Neurospora tetrasperma gw1.27.284.1 N 0.704
gw1.9.306.1 Micromonas pusilla gw1.9.306.1 N 0.704
rnf-113 Caenorhabditis elegans K01G5.1 N 0.704
NCU01954 Neurospora crassa NCU01954 N 0.704
gm1.100391 Emiliania huxleyi gm1.100391 N 0.704
119.m00078 Tetrahymena thermophila 119.m00078 N 0.704
CWC24 Ashbya gossypii CWC24 N 0.704
estExt_Genewise1Plus.C_21344 Tremella mesenterica estExt_Genewise1Plus.C_21344 N 0.704
ATEG_08357 Aspergillus terreus CADATEAG00004925 N 0.704
AO090701000678 Aspergillus oryzae CADAORAG00010977 N 0.704
AFLA_061430 Aspergillus flavus CADAFLAG00006752 N 0.704
Ppa-tag-331 Pristionchus pacificus PPA25510 N 0.704