gw1.57.55.1 (Melampsora laricis populina)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 gw1.57.55.1 T05550_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.57.55.1 CCCH ZF 1 27
gw1.57.55.1 CCCH ZF 39 63

Links

Other CCCH ZF family RBPs
Other Melampsora laricis populina RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTTG_07763 Puccinia triticina PTTG_07763 N 0.889
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.815
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.815
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.815
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.815
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.815
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.796
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.796
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.778
fgenesh1_pg.C_scaffold_4000193 Sporobolomyces roseus fgenesh1_pg.C_scaffold_4000193 N 0.774
0300010273 Ostreococcus tauri 0300010273 I 0.769
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.731
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.731
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.731
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.722
SPPG_04528 Spizellomyces punctatus SPPG_04528 N 0.722
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.722
RO3G_10992 Rhizopus oryzae RO3G_10992 N 0.712
RO3G_05094 Rhizopus oryzae RO3G_05094 N 0.712
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.704
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.704