CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.57.55.1
(
Melampsora laricis populina
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
gw1.57.55.1
T05550_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.57.55.1
CCCH ZF
1
27
YKTELCRSWEEKGTCRYSTKCQFAHGQ
gw1.57.55.1
CCCH ZF
39
63
FKTEICRTFCLHGSCPYGKRCCFLH
Links
Other
CCCH ZF
family RBPs
Other
Melampsora laricis populina
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTTG_07763
Puccinia triticina
PTTG_07763
N
0.889
estExt_fgenesh3_pg.C_770054
Postia placenta
estExt_fgenesh3_pg.C_770054
N
0.815
estExt_fgenesh2_pg.C_10793
Laccaria bicolor
estExt_fgenesh2_pg.C_10793
N
0.815
estExt_fgenesh1_pm.C_10824
Schizophyllum commune
estExt_fgenesh1_pm.C_10824
N
0.815
estExt_genemark.C_30534
Pleurotus ostreatus
estExt_genemark.C_30534
N
0.815
e_gw1.1.2331.1
Agaricus bisporus
e_gw1.1.2331.1
N
0.815
CC1G_04402
Coprinopsis cinerea
CC1G_04402
N
0.796
fgenesh1_pg.C_scaffold_11000103
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_11000103
N
0.796
estExt_fgenesh2_kg.C_10578
Serpula lacrymans
estExt_fgenesh2_kg.C_10578
N
0.778
fgenesh1_pg.C_scaffold_4000193
Sporobolomyces roseus
fgenesh1_pg.C_scaffold_4000193
N
0.774
0300010273
Ostreococcus tauri
0300010273
I
0.769
gwEuk.3.753.1
Ostreococcus lucimarinus
gwEuk.3.753.1
I
0.731
gw1.3.668.1
Ostreococcus RCC809
gw1.3.668.1
I
0.731
gw1.1.1133.1
Micromonas pusilla
gw1.1.1133.1
N
0.731
fgenesh2_pg.C_scaffold_32000041
Selaginella moellendorfii
fgenesh2_pg.C_scaffold_32000041
N
0.722
SPPG_04528
Spizellomyces punctatus
SPPG_04528
N
0.722
e_gw1.45.79.1
Selaginella moellendorfii
e_gw1.45.79.1
N
0.722
RO3G_10992
Rhizopus oryzae
RO3G_10992
N
0.712
RO3G_05094
Rhizopus oryzae
RO3G_05094
N
0.712
AMAG_06814
Allomyces macrogynus
AMAG_06814
N
0.704
AMAG_15989
Allomyces macrogynus
AMAG_15989
N
0.704