fgenesh1_pg.C_scaffold_4000193 (Sporobolomyces roseus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh1_pg.C_scaffold_4000193 T05231_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_4000193 CCCH ZF 691 717
fgenesh1_pg.C_scaffold_4000193 CCCH ZF 729 754

Links

Other CCCH ZF family RBPs
Other Sporobolomyces roseus RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.796
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.796
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.796
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.792
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.792
0300010273 Ostreococcus tauri 0300010273 I 0.792
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.778
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.778
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.778
PTTG_07763 Puccinia triticina PTTG_07763 N 0.778
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.778
gw1.57.55.1 Melampsora laricis populina gw1.57.55.1 N 0.774
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.759
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.755
gw1.8.374.1 Chlorella NC64A gw1.8.374.1 N 0.755
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.741
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.741
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.722
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.722
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.722
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.722
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.722
fgeneshNG_pg.scaffold_32000024 Naegleria gruberi fgeneshNG_pg.scaffold_32000024 N 0.722
AAI00163 Xenopus laevis AAI00163 I 0.722
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.722
AAD24208 Xenopus laevis AAD24208 I 0.722
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.722
AAH84197 Xenopus laevis AAH84197 I 0.722
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.704
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.704
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.704
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.704
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.704
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.704
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.704
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.704
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.704
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.704
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.704
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.704
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.704
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.704
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.704
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.704
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.704
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.704
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.704
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.704
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.704
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.704
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.704
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.704
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.704
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.704
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.704
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.704
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.704
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.704
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.704
zfp36l2 Danio rerio ENSDARG00000021806 I 0.704
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.704
Q805B4 Xenopus laevis Q805B4 I 0.704
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.704
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.704
SPPG_04528 Spizellomyces punctatus SPPG_04528 N 0.704
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.704
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.704
CMA121C Cyanidioschyzon merolae CMA121C N 0.704
BAC54909 Xenopus laevis BAC54909 I 0.704
AAH84221 Xenopus laevis AAH84221 I 0.704
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.704
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.704
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.704
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.704
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.704
AAH44086 Xenopus laevis AAH44086 I 0.704
AAD24209 Xenopus laevis AAD24209 I 0.704
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.704
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.704
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.704
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.704
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.704
zfp36l1b Danio rerio ENSDARG00000021443 I 0.704
LOC100063597 Equus caballus ENSECAG00000018860 I 0.704
ZFP36L2 Homo sapiens ENSG00000152518 I 0.704
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.704
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.704
ZFP36L1 Homo sapiens ENSG00000185650 I 0.704
zfp36l1a Danio rerio ENSDARG00000016154 I 0.704
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.704
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.704
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.704
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.704
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.704
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.704
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.704
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.704
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.704
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.704