mgf009145m (Mimulus guttatus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 mgf009145m T05624_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf009145m CCCH ZF 259 281

Links

Other CCCH ZF family RBPs
Other Mimulus guttatus RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr2.CM0002.380.nc Lotus japonicus chr2.CM0002.380.nc N 0.870
cassava18518.valid.m1 Manihot esculenta cassava18518.valid.m1 N 0.870
XM_002871484.1 Arabidopsis lyrata fgenesh2_kg.6__1236__AT5G12850.1 N 0.826
XM_002876298.1 Arabidopsis lyrata fgenesh2_kg.5__2030__AT3G55980.1 N 0.826
mgf012825m Mimulus guttatus mgf012825m N 0.826
ATSZF1 Arabidopsis thaliana AT3G55980-TAIR-G N 0.826
Glyma02g46610.1 Glycine max Glyma02g46610.1 N 0.826
Glyma14g01990.1 Glycine max Glyma14g01990.1 N 0.826
B9I454_POPTR Populus trichocarpa POPTR_0012s12760 N 0.826
Cucsa.368500 Cucumis sativus Cucsa.368500 N 0.826
cassava37850.valid.m1 Manihot esculenta cassava37850.valid.m1 N 0.826
cassava36564.valid.m1 Manihot esculenta cassava36564.valid.m1 N 0.826
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 0.826
POPTR_0008s06940 Populus trichocarpa POPTR_0008s06940 N 0.826
AT5G12850 Arabidopsis thaliana AT5G12850-TAIR-G N 0.826
MDP0000320891 Malus x domestica MDP0000320891 N 0.826
MDP0000673185 Malus x domestica MDP0000673185 N 0.826
SZF2 Arabidopsis thaliana AT2G40140-TAIR-G N 0.826
Medtr5g090250 Medicago truncatula Medtr5g090250 N 0.826
PK05226.1 Cannabis sativa PK05226.1 N 0.826
Medtr3g028690 Medicago truncatula Medtr3g028690 N 0.783
MDP0000588193 Malus x domestica MDP0000588193 N 0.783
B9HSM9_POPTR Populus trichocarpa POPTR_0010s19520 N 0.783
MDP0000678327 Malus x domestica MDP0000678327 N 0.783
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.783
GSVIVG00032807001 Vitis vinifera GSVIVG00032807001 N 0.783
ppa002415m Prunus persica ppa002415m N 0.783
PK25575.1 Cannabis sativa PK25575.1 N 0.783
SB09G002390 Sorghum bicolor Sb09g002390 N 0.750
Glyma02g39210.1 Glycine max Glyma02g39210.1 N 0.739
Glyma14g37330.1 Glycine max Glyma14g37330.1 N 0.739
ppa002251m Prunus persica ppa002251m N 0.739
Medtr5g079420 Medicago truncatula Medtr5g079420 N 0.739
BGIOSIBCE017416 Oryza indica BGIOSIBCE017416 N 0.708
BRADI2G38247 Brachypodium distachyon BRADI2G38247 N 0.708
LOC_Os05g03760 Oryza sativa LOC_Os05g03760 N 0.708