CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R014340
(
Ailuropoda melanoleuca
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Ame_R014340
T05967_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R014340
CCCH ZF
78
103
TKQVTCRYYLHGLCKEGENCRYSHDL
Ame_R014340
CCCH ZF
222
246
GQQLCRDAAMGQCFRGESCMYLHGE
Ame_R014340
CCCH ZF
379
404
NKTCRYFAEGRGFCPFGENCFYKHAD
Links
Other
CCCH ZF
family RBPs
Other
Ailuropoda melanoleuca
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MKRN3
Felis catus
ENSFCAG00000009688
N
0.948
MKRN3
Oryctolagus cuniculus
ENSOCUG00000012822
N
0.859
MKRN3
Tarsius syrichta
ENSTSYG00000009002
N
0.833
MKRN3
Choloepus hoffmanni
ENSCHOG00000004895
N
0.831
MKRN3
Sus scrofa
ENSSSCG00000004836
N
0.795
MKRN3
Procavia capensis
ENSPCAG00000016788
N
0.792
MKRN3
Spermophilus tridecemlineatus
ENSSTOG00000006095
N
0.747
MKRN3
Homo sapiens
ENSG00000179455
N
0.740
Q6J9M4_9PRIM
Gorilla gorilla
ENSGGOG00000013279
N
0.740
Q6J9M5_PANTR
Pan troglodytes
ENSPTRG00000006823
N
0.740
MKRN3
Callithrix jacchus
ENSCJAG00000022162
N
0.740
ENSPPYG00000006266
Pongo pygmaeus
ENSPPYG00000006266
N
0.740
MKRN3
Macaca mulatta
ENSMMUG00000007879
N
0.727
MKRN3
Vicugna pacos
ENSVPAG00000003919
N
0.701