CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKRN3
(
Oryctolagus cuniculus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSOCUG00000012822
T03056_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000011035
CCCH ZF
96
121
TKQVVCRYYLHGLCKEGENCRYSHDL
ENSOCUP00000011035
CCCH ZF
247
272
MGMQLCPHAARGQCFRGESCMYLHGE
ENSOCUP00000011035
CCCH ZF
405
430
NKPCRYFAEGRGHCPFGEHCFYKHSY
Links
Other
CCCH ZF
family RBPs
Other
Oryctolagus cuniculus
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MKRN3
Tarsius syrichta
ENSTSYG00000009002
N
0.885
Ame_R014340
Ailuropoda melanoleuca
Ame_R014340
N
0.859
MKRN3
Felis catus
ENSFCAG00000009688
N
0.846
MKRN3
Procavia capensis
ENSPCAG00000016788
N
0.821
MKRN3
Choloepus hoffmanni
ENSCHOG00000004895
N
0.821
MKRN3
Spermophilus tridecemlineatus
ENSSTOG00000006095
N
0.785
Q6J9M4_9PRIM
Gorilla gorilla
ENSGGOG00000013279
N
0.756
MKRN3
Callithrix jacchus
ENSCJAG00000022162
N
0.756
Q6J9M5_PANTR
Pan troglodytes
ENSPTRG00000006823
N
0.756
MKRN3
Homo sapiens
ENSG00000179455
N
0.756
ENSPPYG00000006266
Pongo pygmaeus
ENSPPYG00000006266
N
0.756
MKRN3
Macaca mulatta
ENSMMUG00000007879
N
0.744
MKRN3
Cavia porcellus
ENSCPOG00000003604
N
0.734
Mkrn3
Mus musculus
ENSMUSG00000070527
N
0.722
MKRN3
Sus scrofa
ENSSSCG00000004836
N
0.722
Mkrn3
Rattus norvegicus
ENSRNOG00000010172
N
0.722