CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKRN3
(
Spermophilus tridecemlineatus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSSTOG00000006095
T03400_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000005440
CCCH ZF
42
67
RKQIVCRYYLHGQCKEGENCRYSHDP
ENSSTOP00000005440
CCCH ZF
186
211
MGMQLCRYAARGRCFNGESCFYLHGD
ENSSTOP00000005440
CCCH ZF
343
369
RKKDCRYFAHGRGYCPFGENCFYKHTY
Links
Other
CCCH ZF
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MKRN3
Tarsius syrichta
ENSTSYG00000009002
N
0.785
MKRN3
Oryctolagus cuniculus
ENSOCUG00000012822
N
0.785
MKRN3
Cavia porcellus
ENSCPOG00000003604
N
0.759
MKRN3
Felis catus
ENSFCAG00000009688
N
0.747
Ame_R014340
Ailuropoda melanoleuca
Ame_R014340
N
0.747
ENSPPYG00000006266
Pongo pygmaeus
ENSPPYG00000006266
N
0.722
Q6J9M5_PANTR
Pan troglodytes
ENSPTRG00000006823
N
0.722
Q6J9M4_9PRIM
Gorilla gorilla
ENSGGOG00000013279
N
0.722
MKRN3
Homo sapiens
ENSG00000179455
N
0.722
MKRN3
Callithrix jacchus
ENSCJAG00000022162
N
0.722
MKRN3
Choloepus hoffmanni
ENSCHOG00000004895
N
0.709
MKRN3
Macaca mulatta
ENSMMUG00000007879
N
0.709