ppa009294m (Prunus persica)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ppa009294m T07698_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa009294m RRM 13 75
ppa009294m CCHC ZF 99 116
ppa009294m CCHC ZF 121 138

Links

Other CCHC ZF,RRM family RBPs
Other Prunus persica RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.899
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.899
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.899
PK26144.1 Cannabis sativa PK26144.1 N 0.889
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.889
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.889
ppa009074m Prunus persica ppa009074m N 0.879
29805.m001527 Ricinus communis 29805.m001527 N 0.879
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.879
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.879
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.879
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.869
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.869
AC235022_4 Medicago truncatula AC235022_4 N 0.869
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.869
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.869
mgf009930m Mimulus guttatus mgf009930m N 0.859
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.859
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.859
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.859
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.859
SB03G005500 Sorghum bicolor Sb03g005500 N 0.848
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.838
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.838
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.818
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.808
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.808
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.808
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.808
SB09G001910 Sorghum bicolor Sb09g001910 N 0.798
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.798
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.798
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.788
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.788
ppa009671m Prunus persica ppa009671m N 0.778
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.768
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.768
PK05606.1 Cannabis sativa PK05606.1 N 0.717