ENSTNIG00000004821 (Tetraodon nigroviridis)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSTNIG00000004821 T07347_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M109_0.6 		Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		0.701
RBM4
M050_0.6 		Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000007482 RRM 4 66
ENSTNIP00000007482 RRM 80 140
ENSTNIP00000007482 CCHC ZF 158 175

Links

Other CCHC ZF,RRM family RBPs
Other Tetraodon nigroviridis RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTRUG00000013334 Takifugu rubripes ENSTRUG00000013334 I 0.986
RBM14-RBM4 Oryzias latipes ENSORLG00000012496 N 0.915
ENSGACG00000000822 Gasterosteus aculeatus ENSGACG00000000822 I 0.908
rbm4.1 Danio rerio ENSDARG00000036386 I 0.819
RBM4B Ochotona princeps ENSOPRG00000009158 I 0.708
RBM4B Felis catus ENSFCAG00000007394 I 0.708
RBM4B Procavia capensis ENSPCAG00000003414 I 0.708
LOC100058729 Equus caballus ENSECAG00000022987 I 0.708
RBM4B Gorilla gorilla ENSGGOG00000011698 I 0.708
RBM4B Homo sapiens ENSG00000173914 I 0.708
RBM4B Loxodonta africana ENSLAFG00000002285 I 0.708
Rbm4b Mus musculus ENSMUSG00000033760 I 0.708
ENSMUSG00000056951 Mus musculus ENSMUSG00000056951 I 0.708
RBM4_RABIT Oryctolagus cuniculus ENSOCUG00000006695 I 0.708
LOC713553 Macaca mulatta ENSMMUG00000010577 I 0.708
RBM4B Otolemur garnettii ENSOGAG00000015648 I 0.708
RBM4B Microcebus murinus ENSMICG00000003820 I 0.708
ENSLAFG00000028147 Loxodonta africana ENSLAFG00000028147 I 0.708
RBM4B Dasypus novemcinctus ENSDNOG00000019500 I 0.708
RBM4B Sorex araneus ENSSARG00000010710 I 0.708
Rbm4b Rattus norvegicus ENSRNOG00000019650 I 0.708
RBM4B Pteropus vampyrus ENSPVAG00000010487 I 0.708
Ame_R016449 Ailuropoda melanoleuca Ame_R016449 I 0.708
RBM4B Spermophilus tridecemlineatus ENSSTOG00000011226 I 0.708
RBM4B Tupaia belangeri ENSTBEG00000003748 I 0.708
RBM4B Tursiops truncatus ENSTTRG00000011166 I 0.708
Q2KIV3_BOVIN Bos taurus ENSBTAG00000000423 I 0.708
Rbm4 Rattus norvegicus ENSRNOG00000019669 I 0.708
ENSPPYG00000003010 Pongo pygmaeus ENSPPYG00000003010 I 0.708
RBM4B Cavia porcellus ENSCPOG00000013689 I 0.708
RBM4B Pan troglodytes ENSPTRG00000003935 I 0.708
RBM4B Choloepus hoffmanni ENSCHOG00000002892 I 0.708
RBM4B Canis familiaris ENSCAFG00000012378 I 0.708
ENSOPRG00000009149 Ochotona princeps ENSOPRG00000009149 I 0.701
ENSOANG00000003143 Ornithorhynchus anatinus ENSOANG00000003143 I 0.701
ENSOANG00000011036 Ornithorhynchus anatinus ENSOANG00000011036 I 0.701
XR_022144.1 Pan troglodytes ENSPTRG00000003934 I 0.701
ENSPVAG00000010486 Pteropus vampyrus ENSPVAG00000010486 I 0.701
ENSSSCG00000012938 Sus scrofa ENSSSCG00000012938 I 0.701
ENSOCUG00000004731 Oryctolagus cuniculus ENSOCUG00000004731 I 0.701
ENSGGOG00000014455 Gorilla gorilla ENSGGOG00000014455 I 0.701
RBM4 Homo sapiens ENSG00000239306 D 0.701
RBM4_BOVIN Bos taurus ENSBTAG00000031688 I 0.701
ENSCAFG00000012388 Canis familiaris ENSCAFG00000012388 I 0.701
A6MLC8_CALJA Callithrix jacchus ENSCJAG00000001294 I 0.701
Ame_R016450 Ailuropoda melanoleuca Ame_R016450 I 0.701
ENSTTRG00000011164 Tursiops truncatus ENSTTRG00000011164 I 0.701
ENSVPAG00000001949 Vicugna pacos ENSVPAG00000001949 I 0.701
RBM4B Vicugna pacos ENSVPAG00000001950 I 0.701
LOC100394287 Callithrix jacchus ENSCJAG00000001263 I 0.701
ENSCPOG00000013194 Cavia porcellus ENSCPOG00000013194 I 0.701
ENSMICG00000003817 Microcebus murinus ENSMICG00000003817 I 0.701
RBM4 Macaca mulatta ENSMMUG00000020363 I 0.701
XM_001364763.1 Monodelphis domestica ENSMODG00000008047 I 0.701
ENSGACG00000000821 Gasterosteus aculeatus ENSGACG00000000821 N 0.701
RBM4 Homo sapiens ENSG00000173933 I 0.701
LOC100058690 Equus caballus ENSECAG00000022940 I 0.701
ENSFCAG00000007393 Felis catus ENSFCAG00000007393 I 0.701
ENSMODG00000008056 Monodelphis domestica ENSMODG00000008056 I 0.701