A6MLC8_CALJA (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000001294 T35464_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M109_0.6 		Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		1.000
RBM4
M050_0.6 		Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000002268 RRM 4 66
ENSCJAP00000002268 RRM 80 142
ENSCJAP00000002268 CCHC ZF 160 177
ENSCJAP00000002274 RRM 3 66
ENSCJAP00000002274 RRM 81 118
ENSCJAP00000002274 CCHC ZF 135 152
ENSCJAP00000002285 RRM 3 66
ENSCJAP00000002285 RRM 81 143
ENSCJAP00000043473 RRM 4 66
ENSCJAP00000043473 RRM 80 142
ENSCJAP00000043473 CCHC ZF 160 177
ENSCJAP00000045316 RRM 3 66
ENSCJAP00000045316 RRM 81 143
ENSCJAP00000047456 RRM 4 66
ENSCJAP00000047456 RRM 80 141
ENSCJAP00000049186 RRM 4 66
ENSCJAP00000049186 RRM 80 142
ENSCJAP00000049186 CCHC ZF 160 177
ENSCJAP00000051765 RRM 4 66
ENSCJAP00000051765 RRM 80 142
ENSCJAP00000051765 CCHC ZF 160 177

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

98 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM4 Homo sapiens ENSG00000173933 I 1.000
RBM14-RBM4 Homo sapiens ENSG00000248643 N 1.000
ENSFCAG00000007393 Felis catus ENSFCAG00000007393 I 1.000
LOC100058690 Equus caballus ENSECAG00000022940 I 1.000
ENSCAFG00000012388 Canis familiaris ENSCAFG00000012388 I 1.000
ENSCPOG00000013194 Cavia porcellus ENSCPOG00000013194 I 1.000
ENSMICG00000003817 Microcebus murinus ENSMICG00000003817 I 1.000
RBM4 Macaca mulatta ENSMMUG00000020363 I 1.000
ENSVPAG00000001949 Vicugna pacos ENSVPAG00000001949 I 1.000
Ame_R016450 Ailuropoda melanoleuca Ame_R016450 I 1.000
RBM14 Canis familiaris ENSCAFG00000012405 N 1.000
ENSSSCG00000012938 Sus scrofa ENSSSCG00000012938 I 1.000
ENSPVAG00000010486 Pteropus vampyrus ENSPVAG00000010486 I 1.000
ENSOCUG00000004731 Oryctolagus cuniculus ENSOCUG00000004731 I 1.000
XR_022144.1 Pan troglodytes ENSPTRG00000003934 I 1.000
RBM14 Tursiops truncatus ENSTTRG00000011156 N 1.000
ENSGGOG00000014455 Gorilla gorilla ENSGGOG00000014455 I 1.000
RBM14 Macaca mulatta ENSMMUG00000007830 N 1.000
RBM14 Oryctolagus cuniculus ENSOCUG00000022838 N 1.000
RBM14 Ochotona princeps ENSOPRG00000009139 N 1.000
ENSPPYG00000003015 Pongo pygmaeus ENSPPYG00000003015 N 1.000
RBM14 Myotis lucifugus ENSMLUG00000015545 N 1.000
RBM14 Gorilla gorilla ENSGGOG00000009469 N 1.000
RBM14 Cavia porcellus ENSCPOG00000008019 N 1.000
Rbm14 Dipodomys ordii ENSDORG00000002474 N 1.000
RBM4 Homo sapiens ENSG00000239306 D 1.000
RBM14 Pan troglodytes ENSPTRG00000003932 N 1.000
RBM14 Microcebus murinus ENSMICG00000003814 N 1.000
RBM14 Pteropus vampyrus ENSPVAG00000010483 N 1.000
ENSOGAG00000015647 Otolemur garnettii ENSOGAG00000015647 I 0.993
Rbm4 Rattus norvegicus ENSRNOG00000019669 I 0.993
ENSMUSG00000056951 Mus musculus ENSMUSG00000056951 I 0.993
ENSTTRG00000011164 Tursiops truncatus ENSTTRG00000011164 I 0.993
ENSOPRG00000009149 Ochotona princeps ENSOPRG00000009149 I 0.993
ENSLAFG00000028147 Loxodonta africana ENSLAFG00000028147 I 0.993
RBM4_BOVIN Bos taurus ENSBTAG00000031688 I 0.993
Ame_R016451 Ailuropoda melanoleuca Ame_R016451 N 0.992
Rbm14 Mus musculus ENSMUSG00000006456 N 0.992
RBM14 Procavia capensis ENSPCAG00000003334 N 0.992
RBM14_BOVIN Bos taurus ENSBTAG00000001225 N 0.992
Rbm4b Mus musculus ENSMUSG00000033760 I 0.986
ENSOANG00000003143 Ornithorhynchus anatinus ENSOANG00000003143 I 0.986
RBM4B Otolemur garnettii ENSOGAG00000015648 I 0.986
RBM4B Canis familiaris ENSCAFG00000012378 I 0.986
RBM4_RABIT Oryctolagus cuniculus ENSOCUG00000006695 I 0.986
RBM4B Procavia capensis ENSPCAG00000003414 I 0.986
RBM4B Spermophilus tridecemlineatus ENSSTOG00000011226 I 0.986
RBM4B Tupaia belangeri ENSTBEG00000003748 I 0.986
Ame_R016449 Ailuropoda melanoleuca Ame_R016449 I 0.986
RBM4B Sorex araneus ENSSARG00000010710 I 0.986
Rbm4b Rattus norvegicus ENSRNOG00000019650 I 0.986
ENSPPYG00000003010 Pongo pygmaeus ENSPPYG00000003010 I 0.986
RBM4B Pan troglodytes ENSPTRG00000003935 I 0.986
RBM4B Pteropus vampyrus ENSPVAG00000010487 I 0.986
RBM4B Ochotona princeps ENSOPRG00000009158 I 0.986
ENSOANG00000011036 Ornithorhynchus anatinus ENSOANG00000011036 I 0.986
LOC713553 Macaca mulatta ENSMMUG00000010577 I 0.986
Q2KIV3_BOVIN Bos taurus ENSBTAG00000000423 I 0.986
RBM4B Felis catus ENSFCAG00000007394 I 0.986
LOC100058729 Equus caballus ENSECAG00000022987 I 0.986
ENSDORG00000004538 Dipodomys ordii ENSDORG00000004538 I 0.986
RBM4B Choloepus hoffmanni ENSCHOG00000002892 I 0.986
RBM4B Cavia porcellus ENSCPOG00000013689 I 0.986
RBM4B Dasypus novemcinctus ENSDNOG00000019500 I 0.986
RBM4B Homo sapiens ENSG00000173914 I 0.986
RBM4B Erinaceus europaeus ENSEEUG00000000058 I 0.986
RBM4B Gorilla gorilla ENSGGOG00000011698 I 0.986
RBM4B Loxodonta africana ENSLAFG00000002285 I 0.986
RBM4B Microcebus murinus ENSMICG00000003820 I 0.986
ENSMEUG00000001445 Macropus eugenii ENSMEUG00000001445 I 0.979
RBM4B Tursiops truncatus ENSTTRG00000011166 I 0.979
ENSPCAG00000003393 Procavia capensis ENSPCAG00000003393 I 0.979
RBM4B Vicugna pacos ENSVPAG00000001950 I 0.979
LOC425562 Gallus gallus ENSGALG00000018992 I 0.965
ENSPPYG00000003012 Pongo pygmaeus ENSPPYG00000003012 I 0.965
XM_001364763.1 Monodelphis domestica ENSMODG00000008047 I 0.965
ENSMODG00000008056 Monodelphis domestica ENSMODG00000008056 I 0.965
ENSDNOG00000016459 Dasypus novemcinctus ENSDNOG00000016459 N 0.960
LOC100394287 Callithrix jacchus ENSCJAG00000001263 I 0.958
RBM14 Tupaia belangeri ENSTBEG00000003641 N 0.953
ENSMGAG00000016128 Meleagris gallopavo ENSMGAG00000016128 N 0.952
RBM4B Taeniopygia guttata ENSTGUG00000016779 I 0.951
RBM4B Anolis carolinensis ENSACAG00000007777 I 0.938
ENSTBEG00000003727 Tupaia belangeri ENSTBEG00000003727 I 0.931
RBM4B Myotis lucifugus ENSMLUG00000001290 I 0.917
ENSMMUG00000003366 Macaca mulatta ENSMMUG00000003366 I 0.840
RBM14 Sorex araneus ENSSARG00000006530 N 0.795
ENSSSCG00000012929 Sus scrofa ENSSSCG00000012929 N 0.764
RBM14 Dasypus novemcinctus ENSDNOG00000010103 N 0.748
RBM14 Spermophilus tridecemlineatus ENSSTOG00000009796 N 0.748
AAH82645 Xenopus laevis AAH82645 I 0.736
rbm4b Xenopus tropicalis ENSXETG00000026649 I 0.736
rbm4.1 Danio rerio ENSDARG00000036386 I 0.729
AAH73203 Xenopus laevis AAH73203 I 0.708
ENSTRUG00000013334 Takifugu rubripes ENSTRUG00000013334 I 0.701
ENSTNIG00000004821 Tetraodon nigroviridis ENSTNIG00000004821 I 0.701
ENSGACG00000000822 Gasterosteus aculeatus ENSGACG00000000822 I 0.701