ENSCPOG00000013194 (Cavia porcellus)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSCPOG00000013194 T07217_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M109_0.6 		Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		1.000
RBM4
M050_0.6 		Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000011877 RRM 4 66
ENSCPOP00000011877 RRM 80 142
ENSCPOP00000011877 CCHC ZF 160 177

Links

Other CCHC ZF,RRM family RBPs
Other Cavia porcellus RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM4 Homo sapiens ENSG00000173933 I 1.000
RBM4 Homo sapiens ENSG00000239306 D 1.000
A6MLC8_CALJA Callithrix jacchus ENSCJAG00000001294 I 1.000
Ame_R016450 Ailuropoda melanoleuca Ame_R016450 I 1.000
ENSGGOG00000014455 Gorilla gorilla ENSGGOG00000014455 I 1.000
ENSPVAG00000010486 Pteropus vampyrus ENSPVAG00000010486 I 1.000
ENSMICG00000003817 Microcebus murinus ENSMICG00000003817 I 1.000
ENSFCAG00000007393 Felis catus ENSFCAG00000007393 I 1.000
ENSCAFG00000012388 Canis familiaris ENSCAFG00000012388 I 1.000
ENSSSCG00000012938 Sus scrofa ENSSSCG00000012938 I 1.000
RBM4 Macaca mulatta ENSMMUG00000020363 I 1.000
LOC100058690 Equus caballus ENSECAG00000022940 I 1.000
XR_022144.1 Pan troglodytes ENSPTRG00000003934 I 1.000
ENSOCUG00000004731 Oryctolagus cuniculus ENSOCUG00000004731 I 1.000
ENSVPAG00000001949 Vicugna pacos ENSVPAG00000001949 I 1.000
ENSMUSG00000056951 Mus musculus ENSMUSG00000056951 I 0.993
ENSOPRG00000009149 Ochotona princeps ENSOPRG00000009149 I 0.993
ENSOGAG00000015647 Otolemur garnettii ENSOGAG00000015647 I 0.993
ENSTTRG00000011164 Tursiops truncatus ENSTTRG00000011164 I 0.993
Rbm4 Rattus norvegicus ENSRNOG00000019669 I 0.993
RBM4_BOVIN Bos taurus ENSBTAG00000031688 I 0.993
ENSLAFG00000028147 Loxodonta africana ENSLAFG00000028147 I 0.993
Q2KIV3_BOVIN Bos taurus ENSBTAG00000000423 I 0.986
RBM4B Choloepus hoffmanni ENSCHOG00000002892 I 0.986
RBM4B Procavia capensis ENSPCAG00000003414 I 0.986
ENSPPYG00000003010 Pongo pygmaeus ENSPPYG00000003010 I 0.986
RBM4B Pan troglodytes ENSPTRG00000003935 I 0.986
RBM4B Canis familiaris ENSCAFG00000012378 I 0.986
Ame_R016449 Ailuropoda melanoleuca Ame_R016449 I 0.986
RBM4B Cavia porcellus ENSCPOG00000013689 I 0.986
RBM4B Spermophilus tridecemlineatus ENSSTOG00000011226 I 0.986
RBM4B Sorex araneus ENSSARG00000010710 I 0.986
Rbm4b Rattus norvegicus ENSRNOG00000019650 I 0.986
RBM4B Pteropus vampyrus ENSPVAG00000010487 I 0.986
RBM4B Tupaia belangeri ENSTBEG00000003748 I 0.986
RBM4B Ochotona princeps ENSOPRG00000009158 I 0.986
RBM4B Felis catus ENSFCAG00000007394 I 0.986
RBM4B Erinaceus europaeus ENSEEUG00000000058 I 0.986
RBM4B Homo sapiens ENSG00000173914 I 0.986
RBM4B Microcebus murinus ENSMICG00000003820 I 0.986
RBM4B Loxodonta africana ENSLAFG00000002285 I 0.986
RBM4B Gorilla gorilla ENSGGOG00000011698 I 0.986
LOC713553 Macaca mulatta ENSMMUG00000010577 I 0.986
LOC100058729 Equus caballus ENSECAG00000022987 I 0.986
RBM4_RABIT Oryctolagus cuniculus ENSOCUG00000006695 I 0.986
RBM4B Otolemur garnettii ENSOGAG00000015648 I 0.986
RBM4B Dasypus novemcinctus ENSDNOG00000019500 I 0.986
ENSOANG00000011036 Ornithorhynchus anatinus ENSOANG00000011036 I 0.986
ENSDORG00000004538 Dipodomys ordii ENSDORG00000004538 I 0.986
Rbm4b Mus musculus ENSMUSG00000033760 I 0.986
ENSOANG00000003143 Ornithorhynchus anatinus ENSOANG00000003143 I 0.986
RBM4B Vicugna pacos ENSVPAG00000001950 I 0.979
RBM4B Tursiops truncatus ENSTTRG00000011166 I 0.979
ENSMEUG00000001445 Macropus eugenii ENSMEUG00000001445 I 0.979
ENSPCAG00000003393 Procavia capensis ENSPCAG00000003393 I 0.979
ENSPPYG00000003012 Pongo pygmaeus ENSPPYG00000003012 I 0.965
XM_001364763.1 Monodelphis domestica ENSMODG00000008047 I 0.965
LOC425562 Gallus gallus ENSGALG00000018992 I 0.965
ENSMODG00000008056 Monodelphis domestica ENSMODG00000008056 I 0.965
LOC100394287 Callithrix jacchus ENSCJAG00000001263 I 0.958
RBM4B Taeniopygia guttata ENSTGUG00000016779 I 0.951
RBM4B Anolis carolinensis ENSACAG00000007777 I 0.938
ENSTBEG00000003727 Tupaia belangeri ENSTBEG00000003727 I 0.931
RBM4B Myotis lucifugus ENSMLUG00000001290 I 0.917
ENSMMUG00000003366 Macaca mulatta ENSMMUG00000003366 I 0.840
AAH82645 Xenopus laevis AAH82645 I 0.736
rbm4b Xenopus tropicalis ENSXETG00000026649 I 0.736
rbm4.1 Danio rerio ENSDARG00000036386 I 0.729
AAH73203 Xenopus laevis AAH73203 I 0.708
ENSGACG00000000822 Gasterosteus aculeatus ENSGACG00000000822 I 0.701
ENSTRUG00000013334 Takifugu rubripes ENSTRUG00000013334 I 0.701
ENSTNIG00000004821 Tetraodon nigroviridis ENSTNIG00000004821 I 0.701