Rbm4 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000019669 T41126_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M109_0.6 		Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		0.993
RBM4
M050_0.6 		Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		0.993
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000026612 RRM 4 66
ENSRNOP00000026612 RRM 80 142
ENSRNOP00000026612 CCHC ZF 160 177
ENSRNOP00000026621 RRM 3 66
ENSRNOP00000026621 RRM 81 143
ENSRNOP00000026636 RRM 3 50
ENSRNOP00000026636 RRM 78 115
ENSRNOP00000051728 RRM 3 66
ENSRNOP00000051728 RRM 81 143
ENSRNOP00000059872 RRM 4 66
ENSRNOP00000059872 RRM 80 141
ENSRNOP00000060151 RRM 3 66
ENSRNOP00000060151 RRM 81 118
ENSRNOP00000060151 CCHC ZF 135 152

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMUSG00000056951 Mus musculus ENSMUSG00000056951 I 1.000
ENSLAFG00000028147 Loxodonta africana ENSLAFG00000028147 I 1.000
ENSOCUG00000004731 Oryctolagus cuniculus ENSOCUG00000004731 I 0.993
RBM4_RABIT Oryctolagus cuniculus ENSOCUG00000006695 I 0.993
RBM4B Ochotona princeps ENSOPRG00000009158 I 0.993
RBM4B Procavia capensis ENSPCAG00000003414 I 0.993
RBM4 Macaca mulatta ENSMMUG00000020363 I 0.993
ENSMICG00000003817 Microcebus murinus ENSMICG00000003817 I 0.993
RBM4B Loxodonta africana ENSLAFG00000002285 I 0.993
RBM4B Microcebus murinus ENSMICG00000003820 I 0.993
LOC713553 Macaca mulatta ENSMMUG00000010577 I 0.993
ENSPPYG00000003010 Pongo pygmaeus ENSPPYG00000003010 I 0.993
Rbm4b Mus musculus ENSMUSG00000033760 I 0.993
XR_022144.1 Pan troglodytes ENSPTRG00000003934 I 0.993
ENSVPAG00000001949 Vicugna pacos ENSVPAG00000001949 I 0.993
RBM4B Tupaia belangeri ENSTBEG00000003748 I 0.993
Ame_R016449 Ailuropoda melanoleuca Ame_R016449 I 0.993
Ame_R016450 Ailuropoda melanoleuca Ame_R016450 I 0.993
RBM4 Homo sapiens ENSG00000239306 D 0.993
A6MLC8_CALJA Callithrix jacchus ENSCJAG00000001294 I 0.993
RBM4B Spermophilus tridecemlineatus ENSSTOG00000011226 I 0.993
ENSSSCG00000012938 Sus scrofa ENSSSCG00000012938 I 0.993
ENSPVAG00000010486 Pteropus vampyrus ENSPVAG00000010486 I 0.993
RBM4B Pan troglodytes ENSPTRG00000003935 I 0.993
RBM4B Pteropus vampyrus ENSPVAG00000010487 I 0.993
Rbm4b Rattus norvegicus ENSRNOG00000019650 I 0.993
RBM4B Sorex araneus ENSSARG00000010710 I 0.993
ENSGGOG00000014455 Gorilla gorilla ENSGGOG00000014455 I 0.993
RBM4B Otolemur garnettii ENSOGAG00000015648 I 0.993
ENSCPOG00000013194 Cavia porcellus ENSCPOG00000013194 I 0.993
RBM4B Cavia porcellus ENSCPOG00000013689 I 0.993
RBM4B Dasypus novemcinctus ENSDNOG00000019500 I 0.993
LOC100058729 Equus caballus ENSECAG00000022987 I 0.993
RBM4B Choloepus hoffmanni ENSCHOG00000002892 I 0.993
ENSCAFG00000012388 Canis familiaris ENSCAFG00000012388 I 0.993
RBM4B Gorilla gorilla ENSGGOG00000011698 I 0.993
Q2KIV3_BOVIN Bos taurus ENSBTAG00000000423 I 0.993
RBM4B Canis familiaris ENSCAFG00000012378 I 0.993
ENSFCAG00000007393 Felis catus ENSFCAG00000007393 I 0.993
LOC100058690 Equus caballus ENSECAG00000022940 I 0.993
RBM4B Felis catus ENSFCAG00000007394 I 0.993
RBM4B Homo sapiens ENSG00000173914 I 0.993
RBM4 Homo sapiens ENSG00000173933 I 0.993
RBM14-RBM4 Homo sapiens ENSG00000248643 N 0.992
ENSTTRG00000011164 Tursiops truncatus ENSTTRG00000011164 I 0.986
ENSPCAG00000003393 Procavia capensis ENSPCAG00000003393 I 0.986
RBM4B Vicugna pacos ENSVPAG00000001950 I 0.986
RBM4_BOVIN Bos taurus ENSBTAG00000031688 I 0.986
ENSOPRG00000009149 Ochotona princeps ENSOPRG00000009149 I 0.986
RBM4B Tursiops truncatus ENSTTRG00000011166 I 0.986
ENSOANG00000003143 Ornithorhynchus anatinus ENSOANG00000003143 I 0.986
ENSOGAG00000015647 Otolemur garnettii ENSOGAG00000015647 I 0.986
ENSOANG00000011036 Ornithorhynchus anatinus ENSOANG00000011036 I 0.986
RBM4B Erinaceus europaeus ENSEEUG00000000058 I 0.979
ENSDORG00000004538 Dipodomys ordii ENSDORG00000004538 I 0.979
ENSMEUG00000001445 Macropus eugenii ENSMEUG00000001445 I 0.979
ENSMODG00000008056 Monodelphis domestica ENSMODG00000008056 I 0.965
LOC100394287 Callithrix jacchus ENSCJAG00000001263 I 0.965
LOC425562 Gallus gallus ENSGALG00000018992 I 0.965
XM_001364763.1 Monodelphis domestica ENSMODG00000008047 I 0.965
ENSPPYG00000003012 Pongo pygmaeus ENSPPYG00000003012 I 0.958
ENSMGAG00000016128 Meleagris gallopavo ENSMGAG00000016128 N 0.952
ENSDNOG00000016459 Dasypus novemcinctus ENSDNOG00000016459 N 0.952
RBM4B Taeniopygia guttata ENSTGUG00000016779 I 0.951
RBM4B Anolis carolinensis ENSACAG00000007777 I 0.938
RBM4B Myotis lucifugus ENSMLUG00000001290 I 0.924
ENSTBEG00000003727 Tupaia belangeri ENSTBEG00000003727 I 0.924
RBM14_BOVIN Bos taurus ENSBTAG00000001225 N 0.890
Ame_R016451 Ailuropoda melanoleuca Ame_R016451 N 0.890
Rbm14 Mus musculus ENSMUSG00000006456 N 0.890
RBM14 Gorilla gorilla ENSGGOG00000009469 N 0.882
Rbm14 Dipodomys ordii ENSDORG00000002474 N 0.882
RBM14 Pan troglodytes ENSPTRG00000003932 N 0.882
RBM14 Pteropus vampyrus ENSPVAG00000010483 N 0.882
RBM14 Microcebus murinus ENSMICG00000003814 N 0.882
RBM14 Myotis lucifugus ENSMLUG00000015545 N 0.882
RBM14 Oryctolagus cuniculus ENSOCUG00000022838 N 0.882
ENSPPYG00000003015 Pongo pygmaeus ENSPPYG00000003015 N 0.882
RBM14 Macaca mulatta ENSMMUG00000007830 N 0.882
RBM14 Ochotona princeps ENSOPRG00000009139 N 0.882
RBM14 Cavia porcellus ENSCPOG00000008019 N 0.882
RBM14 Tursiops truncatus ENSTTRG00000011156 N 0.882
RBM14 Canis familiaris ENSCAFG00000012405 N 0.882
RBM14 Procavia capensis ENSPCAG00000003334 N 0.874
ENSMMUG00000003366 Macaca mulatta ENSMMUG00000003366 I 0.847
RBM14 Tupaia belangeri ENSTBEG00000003641 N 0.835
ENSSSCG00000012929 Sus scrofa ENSSSCG00000012929 N 0.784
RBM14 Sorex araneus ENSSARG00000006530 N 0.784
RBM14 Spermophilus tridecemlineatus ENSSTOG00000009796 N 0.755
RBM14 Dasypus novemcinctus ENSDNOG00000010103 N 0.740
rbm4.1 Danio rerio ENSDARG00000036386 I 0.736
AAH82645 Xenopus laevis AAH82645 I 0.736
rbm4b Xenopus tropicalis ENSXETG00000026649 I 0.736
ENSTNIG00000004821 Tetraodon nigroviridis ENSTNIG00000004821 I 0.708
ENSTRUG00000013334 Takifugu rubripes ENSTRUG00000013334 I 0.708
ENSGACG00000000822 Gasterosteus aculeatus ENSGACG00000000822 I 0.708
AAH73203 Xenopus laevis AAH73203 I 0.708
RBM14-RBM4 Oryzias latipes ENSORLG00000012496 N 0.701