CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTTG_11637
(
Puccinia triticina
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PTTG_11637
T08502_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PTTG_11637T0
CCHC ZF
22
39
VTCFKCGEPGHYSRECPQ
Links
Other
CCHC ZF
family RBPs
Other
Puccinia triticina
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA03915
Caenorhabditis japonica
CJA03915
N
0.833
CJA26046
Caenorhabditis japonica
CJA26046
N
0.833
GRMZM2G069218
Zea mays
GRMZM2G069218
N
0.722
XP_002161628.1
Hydra magnipapillata
XP_002161628.1
N
0.722
60758
Aureococcus anophagefferens
60758
N
0.722
CRE21310
Caenorhabditis remanei
CRE21310
N
0.722
BRADI3G11560
Brachypodium distachyon
BRADI3G11560
N
0.722
CJA01250
Caenorhabditis japonica
CJA01250
N
0.722