PK07279.1 (Cannabis sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 PK07279.1 T08772_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK07279.1 CCHC ZF 295 311

Links

Other CCHC ZF family RBPs
Other Cannabis sativa RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000881m Prunus persica ppa000881m N 0.833
MDP0000127462 Malus x domestica MDP0000127462 N 0.833
GRMZM2G099630 Zea mays GRMZM2G099630 N 0.833
MDP0000214139 Malus x domestica MDP0000214139 N 0.833
BRADI1G05660 Brachypodium distachyon BRADI1G05660 N 0.833
LOC_Os03g58060 Oryza sativa LOC_Os03g58060 N 0.833
BGIOSIBCE013267 Oryza indica BGIOSIBCE013267 N 0.833
MDP0000274866 Malus x domestica MDP0000274866 N 0.833
BRADI2G56440 Brachypodium distachyon BRADI2G56440 N 0.824
LjB12P21.20.nc Lotus japonicus LjB12P21.20.nc N 0.778
mgf012893m Mimulus guttatus mgf012893m N 0.778
Glyma03g40500.1 Glycine max Glyma03g40500.1 N 0.778
Medtr7g140440 Medicago truncatula Medtr7g140440 N 0.778
SB01G005340 Sorghum bicolor Sb01g005340 N 0.778
GSVIVG00021865001 Vitis vinifera GSVIVG00021865001 N 0.778
MDP0000941174 Malus x domestica MDP0000941174 N 0.765
GRMZM2G064868 Zea mays GRMZM2G064868 N 0.765
mgf002253m Mimulus guttatus mgf002253m N 0.765
BGIOSIBCE004440 Oryza indica BGIOSIBCE004440 N 0.765
LOC_Os01g65220 Oryza sativa LOC_Os01g65220 N 0.765
GRMZM2G121404 Zea mays GRMZM2G121404 N 0.765
MDP0000206000 Malus x domestica MDP0000206000 N 0.765
SB07G005160 Sorghum bicolor Sb07g005160 N 0.765
SB03G010040 Sorghum bicolor Sb03g010040 N 0.765
Glyma19g43160.1 Glycine max Glyma19g43160.1 N 0.722
Cucsa.133490 Cucumis sativus Cucsa.133490 N 0.722
B9I8A8_POPTR Populus trichocarpa POPTR_0030s00400 N 0.722
cassava20905.m1 Manihot esculenta cassava20905.m1 N 0.722
POPTR_0005s05060 Populus trichocarpa POPTR_0005s05060 N 0.722
30128.m008637 Ricinus communis 30128.m008637 N 0.722
cassava6289.valid.m1 Manihot esculenta cassava6289.valid.m1 N 0.706
Cucsa.033870 Cucumis sativus Cucsa.033870 N 0.706
ppa000605m Prunus persica ppa000605m N 0.706
Medtr4g079110 Medicago truncatula Medtr4g079110 N 0.706
cassava6288.valid.m1 Manihot esculenta cassava6288.valid.m1 N 0.706
cassava11145.m1 Manihot esculenta cassava11145.m1 N 0.706
B9GQW8_POPTR Populus trichocarpa POPTR_0002s02570 N 0.706
B9H4V3_POPTR Populus trichocarpa POPTR_0005s25870 N 0.706
XM_002865463.1 Arabidopsis lyrata scaffold_800897.1 N 0.706
30170.m014167 Ricinus communis 30170.m014167 N 0.706
GSVIVG00009879001 Vitis vinifera GSVIVG00009879001 N 0.706
CRE24570 Caenorhabditis remanei CRE24570 N 0.706
CRE08346 Caenorhabditis remanei CRE08346 N 0.706
CRE13664 Caenorhabditis remanei CRE13664 N 0.706
CRE19006 Caenorhabditis remanei CRE19006 N 0.706
cassava11141.m1 Manihot esculenta cassava11141.m1 N 0.706
cassava11142.m1 Manihot esculenta cassava11142.m1 N 0.706
cassava11148.m1 Manihot esculenta cassava11148.m1 N 0.706
cassava11149.m1 Manihot esculenta cassava11149.m1 N 0.706
cassava11150.m1 Manihot esculenta cassava11150.m1 N 0.706
cassava11147.m1 Manihot esculenta cassava11147.m1 N 0.706
cassava11146.m1 Manihot esculenta cassava11146.m1 N 0.706
cassava11143.m1 Manihot esculenta cassava11143.m1 N 0.706
cassava11144.m1 Manihot esculenta cassava11144.m1 N 0.706
PK11796.1 Cannabis sativa PK11796.1 N 0.706
cassava6287.valid.m1 Manihot esculenta cassava6287.valid.m1 N 0.706