SB01G005340 (Sorghum bicolor)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 Sb01g005340 T12802_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb01g005340.1 CCHC ZF 263 280

Links

Other CCHC ZF family RBPs
Other Sorghum bicolor RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000214139 Malus x domestica MDP0000214139 N 0.944
MDP0000274866 Malus x domestica MDP0000274866 N 0.944
MDP0000127462 Malus x domestica MDP0000127462 N 0.944
LjB12P21.20.nc Lotus japonicus LjB12P21.20.nc N 0.944
mgf012893m Mimulus guttatus mgf012893m N 0.944
ppa000881m Prunus persica ppa000881m N 0.944
BGIOSIBCE013267 Oryza indica BGIOSIBCE013267 N 0.944
B9I8A8_POPTR Populus trichocarpa POPTR_0030s00400 N 0.944
POPTR_0005s05060 Populus trichocarpa POPTR_0005s05060 N 0.944
LOC_Os03g58060 Oryza sativa LOC_Os03g58060 N 0.944
BRADI1G05660 Brachypodium distachyon BRADI1G05660 N 0.944
cassava20905.m1 Manihot esculenta cassava20905.m1 N 0.944
GRMZM2G099630 Zea mays GRMZM2G099630 N 0.944
GSVIVG00021865001 Vitis vinifera GSVIVG00021865001 N 0.889
Medtr7g140440 Medicago truncatula Medtr7g140440 N 0.833
Glyma19g43160.1 Glycine max Glyma19g43160.1 N 0.833
30128.m008637 Ricinus communis 30128.m008637 N 0.833
Glyma03g40500.1 Glycine max Glyma03g40500.1 N 0.833
PK07279.1 Cannabis sativa PK07279.1 N 0.778
PDK_20s1528451g001 Phoenix dactylifera PDK_20s1528451g001 N 0.778
PDK_20s1387941g001 Phoenix dactylifera PDK_20s1387941g001 N 0.778
BRADI2G56440 Brachypodium distachyon BRADI2G56440 N 0.778
Cucsa.133490 Cucumis sativus Cucsa.133490 N 0.778
ppa000605m Prunus persica ppa000605m N 0.722
30170.m014167 Ricinus communis 30170.m014167 N 0.722
PDK_20s1898261g001 Phoenix dactylifera PDK_20s1898261g001 N 0.722
B9GQW8_POPTR Populus trichocarpa POPTR_0002s02570 N 0.722
B9H4V3_POPTR Populus trichocarpa POPTR_0005s25870 N 0.722
cassava11143.m1 Manihot esculenta cassava11143.m1 N 0.722
LOC_Os01g65220 Oryza sativa LOC_Os01g65220 N 0.722
SB07G005160 Sorghum bicolor Sb07g005160 N 0.722
cassava11141.m1 Manihot esculenta cassava11141.m1 N 0.722
cassava11142.m1 Manihot esculenta cassava11142.m1 N 0.722
BGIOSIBCE004440 Oryza indica BGIOSIBCE004440 N 0.722
cassava11144.m1 Manihot esculenta cassava11144.m1 N 0.722
cassava11147.m1 Manihot esculenta cassava11147.m1 N 0.722
Cucsa.033870 Cucumis sativus Cucsa.033870 N 0.722
Glyma20g37260.1 Glycine max Glyma20g37260.1 N 0.722
mgf002253m Mimulus guttatus mgf002253m N 0.722
cassava6289.valid.m1 Manihot esculenta cassava6289.valid.m1 N 0.722
cassava6288.valid.m1 Manihot esculenta cassava6288.valid.m1 N 0.722
cassava11149.m1 Manihot esculenta cassava11149.m1 N 0.722
cassava6287.valid.m1 Manihot esculenta cassava6287.valid.m1 N 0.722
cassava11148.m1 Manihot esculenta cassava11148.m1 N 0.722
GRMZM2G064868 Zea mays GRMZM2G064868 N 0.722
chr5.LjT15D05.170.nd Lotus japonicus chr5.LjT15D05.170.nd N 0.722
cassava11150.m1 Manihot esculenta cassava11150.m1 N 0.722
cassava11146.m1 Manihot esculenta cassava11146.m1 N 0.722
Medtr4g079110 Medicago truncatula Medtr4g079110 N 0.722
Medtr1g096550 Medicago truncatula Medtr1g096550 N 0.722
SB03G010040 Sorghum bicolor Sb03g010040 N 0.722
GRMZM2G121404 Zea mays GRMZM2G121404 N 0.722
cassava11145.m1 Manihot esculenta cassava11145.m1 N 0.722