POPTR_0005s05060 (Populus trichocarpa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 POPTR_0005s05060 T12711_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s05060.1 CCHC ZF 263 280

Links

Other CCHC ZF family RBPs
Other Populus trichocarpa RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9I8A8_POPTR Populus trichocarpa POPTR_0030s00400 N 1.000
SB01G005340 Sorghum bicolor Sb01g005340 N 0.944
MDP0000127462 Malus x domestica MDP0000127462 N 0.889
MDP0000214139 Malus x domestica MDP0000214139 N 0.889
LjB12P21.20.nc Lotus japonicus LjB12P21.20.nc N 0.889
GRMZM2G099630 Zea mays GRMZM2G099630 N 0.889
mgf012893m Mimulus guttatus mgf012893m N 0.889
ppa000881m Prunus persica ppa000881m N 0.889
cassava20905.m1 Manihot esculenta cassava20905.m1 N 0.889
MDP0000274866 Malus x domestica MDP0000274866 N 0.889
LOC_Os03g58060 Oryza sativa LOC_Os03g58060 N 0.889
BRADI1G05660 Brachypodium distachyon BRADI1G05660 N 0.889
BGIOSIBCE013267 Oryza indica BGIOSIBCE013267 N 0.889
PDK_20s1387941g001 Phoenix dactylifera PDK_20s1387941g001 N 0.833
GSVIVG00021865001 Vitis vinifera GSVIVG00021865001 N 0.833
GRMZM2G121404 Zea mays GRMZM2G121404 N 0.778
B9H4V3_POPTR Populus trichocarpa POPTR_0005s25870 N 0.778
GRMZM2G064868 Zea mays GRMZM2G064868 N 0.778
B9GQW8_POPTR Populus trichocarpa POPTR_0002s02570 N 0.778
Medtr1g096550 Medicago truncatula Medtr1g096550 N 0.778
LOC_Os01g65220 Oryza sativa LOC_Os01g65220 N 0.778
Glyma20g37260.1 Glycine max Glyma20g37260.1 N 0.778
ppa000605m Prunus persica ppa000605m N 0.778
chr5.LjT15D05.170.nd Lotus japonicus chr5.LjT15D05.170.nd N 0.778
BGIOSIBCE004440 Oryza indica BGIOSIBCE004440 N 0.778
Medtr7g140440 Medicago truncatula Medtr7g140440 N 0.778
Medtr4g079110 Medicago truncatula Medtr4g079110 N 0.778
mgf002253m Mimulus guttatus mgf002253m N 0.778
Glyma19g43160.1 Glycine max Glyma19g43160.1 N 0.778
cassava11146.m1 Manihot esculenta cassava11146.m1 N 0.778
cassava11147.m1 Manihot esculenta cassava11147.m1 N 0.778
cassava11148.m1 Manihot esculenta cassava11148.m1 N 0.778
cassava11145.m1 Manihot esculenta cassava11145.m1 N 0.778
cassava11144.m1 Manihot esculenta cassava11144.m1 N 0.778
cassava11141.m1 Manihot esculenta cassava11141.m1 N 0.778
30170.m014167 Ricinus communis 30170.m014167 N 0.778
cassava11143.m1 Manihot esculenta cassava11143.m1 N 0.778
cassava11142.m1 Manihot esculenta cassava11142.m1 N 0.778
cassava11149.m1 Manihot esculenta cassava11149.m1 N 0.778
Glyma03g40500.1 Glycine max Glyma03g40500.1 N 0.778
SB07G005160 Sorghum bicolor Sb07g005160 N 0.778
SB03G010040 Sorghum bicolor Sb03g010040 N 0.778
cassava11150.m1 Manihot esculenta cassava11150.m1 N 0.778
30128.m008637 Ricinus communis 30128.m008637 N 0.778
cassava6287.valid.m1 Manihot esculenta cassava6287.valid.m1 N 0.778
cassava6289.valid.m1 Manihot esculenta cassava6289.valid.m1 N 0.778
cassava6288.valid.m1 Manihot esculenta cassava6288.valid.m1 N 0.778
GSVIVG00009879001 Vitis vinifera GSVIVG00009879001 N 0.722
BRADI2G56440 Brachypodium distachyon BRADI2G56440 N 0.722
XM_002865463.1 Arabidopsis lyrata scaffold_800897.1 N 0.722
MDP0000941174 Malus x domestica MDP0000941174 N 0.722
Glyma10g30150.1 Glycine max Glyma10g30150.1 N 0.722
Glyma14g40510.1 Glycine max Glyma14g40510.1 N 0.722
Glyma17g37650.1 Glycine max Glyma17g37650.1 N 0.722
Cucsa.133490 Cucumis sativus Cucsa.133490 N 0.722
MDP0000206000 Malus x domestica MDP0000206000 N 0.722
PK07279.1 Cannabis sativa PK07279.1 N 0.722
PDK_20s1528451g001 Phoenix dactylifera PDK_20s1528451g001 N 0.722
PK11796.1 Cannabis sativa PK11796.1 N 0.722