CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CRE11513
(
Caenorhabditis remanei
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CRE11513
T09864_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE11513
CCHC ZF
407
424
QKCFSCGGVGHLARQCPS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis remanei
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CRE02519
Caenorhabditis remanei
CRE02519
N
1.000
CRE02565
Caenorhabditis remanei
CRE02565
N
0.889
CRE13664
Caenorhabditis remanei
CRE13664
N
0.889
CRE08346
Caenorhabditis remanei
CRE08346
N
0.889
CRE07474
Caenorhabditis remanei
CRE07474
N
0.889
CRE19006
Caenorhabditis remanei
CRE19006
N
0.889
CRE24570
Caenorhabditis remanei
CRE24570
N
0.889
CRE09693
Caenorhabditis remanei
CRE09693
N
0.833
CRE03622
Caenorhabditis remanei
CRE03622
N
0.833
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.778
CJA28132
Caenorhabditis japonica
CJA28132
N
0.722
CJA29053
Caenorhabditis japonica
CJA29053
N
0.722
CJA28002
Caenorhabditis japonica
CJA28002
N
0.722
CJA18092
Caenorhabditis japonica
CJA18092
N
0.722
CJA07934
Caenorhabditis japonica
CJA07934
N
0.722
CJA02757
Caenorhabditis japonica
CJA02757
N
0.722
nasonia_NCBI_hmm129024
Nasonia vitripennis
nasonia_NCBI_hmm129024
N
0.722
CJA12566
Caenorhabditis japonica
CJA12566
N
0.722
CJA13138
Caenorhabditis japonica
CJA13138
N
0.722
CJA21290
Caenorhabditis japonica
CJA21290
N
0.722
CJA15515
Caenorhabditis japonica
CJA15515
N
0.722
CJA13676
Caenorhabditis japonica
CJA13676
N
0.722
CJA26146
Caenorhabditis japonica
CJA26146
N
0.722