CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA12566
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA12566
T09693_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA12566
CCHC ZF
974
991
RKCYVCGGSGHLARQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA00955
Caenorhabditis japonica
CJA00955
N
0.722
CJA02757
Caenorhabditis japonica
CJA02757
N
0.722
CJA05078
Caenorhabditis japonica
CJA05078
N
0.722
CJA11030
Caenorhabditis japonica
CJA11030
N
0.722
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.722
Aqu1.224465
Amphimedon queenslandica
Aqu1.224465
N
0.722
CJA15515
Caenorhabditis japonica
CJA15515
N
0.722
CJA28002
Caenorhabditis japonica
CJA28002
N
0.722
CRE02519
Caenorhabditis remanei
CRE02519
N
0.722
CRE11513
Caenorhabditis remanei
CRE11513
N
0.722
CJA13503
Caenorhabditis japonica
CJA13503
N
0.722