CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA13503
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA13503
T09704_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA13503
CCHC ZF
405
422
TKCSNCGGIGHVARQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA28002
Caenorhabditis japonica
CJA28002
N
0.944
CJA15515
Caenorhabditis japonica
CJA15515
N
0.944
CJA02757
Caenorhabditis japonica
CJA02757
N
0.833
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.778
CJA21290
Caenorhabditis japonica
CJA21290
N
0.778
CJA13138
Caenorhabditis japonica
CJA13138
N
0.778
CJA18092
Caenorhabditis japonica
CJA18092
N
0.778
CJA07934
Caenorhabditis japonica
CJA07934
N
0.722
CJA12566
Caenorhabditis japonica
CJA12566
N
0.722
CJA02670
Caenorhabditis japonica
CJA02670
N
0.722
CJA10177
Caenorhabditis japonica
CJA10177
N
0.722
CRE09308
Caenorhabditis remanei
CRE09308
N
0.722
CJA27243
Caenorhabditis japonica
CJA27243
N
0.722
CJA23650
Caenorhabditis japonica
CJA23650
N
0.722
CJA28132
Caenorhabditis japonica
CJA28132
N
0.722
CJA13676
Caenorhabditis japonica
CJA13676
N
0.722
CRE13684
Caenorhabditis remanei
CRE13684
N
0.722
CJA00525
Caenorhabditis japonica
CJA00525
N
0.722