CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ENSGACG00000020110
(
Gasterosteus aculeatus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSGACG00000020110
T10214_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000026570
CCHC ZF
106
123
GRCFRCGGEGHLARVCPE
Links
Other
CCHC ZF
family RBPs
Other
Gasterosteus aculeatus
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSGACG00000013495
Gasterosteus aculeatus
ENSGACG00000013495
N
0.944
ENSGACG00000001944
Gasterosteus aculeatus
ENSGACG00000001944
N
0.889
ENSGACG00000013464
Gasterosteus aculeatus
ENSGACG00000013464
N
0.722
CRE07474
Caenorhabditis remanei
CRE07474
N
0.722
CRE02565
Caenorhabditis remanei
CRE02565
N
0.722
PTTG_08665
Puccinia triticina
PTTG_08665
N
0.722
PTTG_09070
Puccinia triticina
PTTG_09070
N
0.722
PTTG_10291
Puccinia triticina
PTTG_10291
N
0.722
PTTG_06752
Puccinia triticina
PTTG_06752
N
0.722