CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZCCHC6
(
Procavia capensis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSPCAG00000011630
T10410_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000010973
CCHC ZF
1245
1262
RCCRICGKIGHFMKDCPM
ENSPCAP00000010973
CCHC ZF
1351
1368
KRCFICGREGHIKKECPQ
Links
Other
CCHC ZF
family RBPs
Other
Procavia capensis
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZCCHC6
Pan troglodytes
ENSPTRG00000021076
N
1.000
ZCCHC6
Homo sapiens
ENSG00000083223
N
1.000
ZCCHC6
Macaca mulatta
ENSMMUG00000003401
N
1.000
ZCCHC6
Callithrix jacchus
ENSCJAG00000001845
N
1.000
ZCCHC6
Ochotona princeps
ENSOPRG00000002893
N
0.972
ZCCHC6
Echinops telfairi
ENSETEG00000007739
N
0.972
ZCCHC6
Otolemur garnettii
ENSOGAG00000015630
N
0.722
ZCCHC6
Loxodonta africana
ENSLAFG00000007884
N
0.722
ZCCHC11
Gorilla gorilla
ENSGGOG00000009886
N
0.722
ZCCHC6
Dasypus novemcinctus
ENSDNOG00000010663
N
0.722
ZCCHC11
Pteropus vampyrus
ENSPVAG00000009804
N
0.722
Zcchc11
Rattus norvegicus
ENSRNOG00000009720
N
0.722
ZCCHC6
Choloepus hoffmanni
ENSCHOG00000011129
N
0.722
ENSCSAVG00000006670
Ciona savignyi
ENSCSAVG00000006670
N
0.722