XM_002865719.1 (Arabidopsis lyrata)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pm.C_scaffold_8000738 T10646_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_8000738 CCHC ZF 924 941

Links

Other CCHC ZF family RBPs
Other Arabidopsis lyrata RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
emb1441 Arabidopsis thaliana AT5G49930-TAIR-G N 1.000
MDP0000306612 Malus x domestica MDP0000306612 N 0.833
LjSGA_011995.1 Lotus japonicus LjSGA_011995.1 N 0.778
ppa000469m Prunus persica ppa000469m N 0.778
e_gw1.117.3.1 Physcomitrella patens e_gw1.117.3.1 N 0.778
Medtr2g037320 Medicago truncatula Medtr2g037320 N 0.778
BGIOSIBCE036979 Oryza indica BGIOSIBCE036979 N 0.722
PDK_20s1341991g003 Phoenix dactylifera PDK_20s1341991g003 N 0.722
PK11905.1 Cannabis sativa PK11905.1 N 0.722
GRMZM2G063544 Zea mays GRMZM2G063544 N 0.722
SB08G018400 Sorghum bicolor Sb08g018400 N 0.722
LOC_Os12g37720 Oryza sativa LOC_Os12g37720 N 0.722
Cucsa.135100 Cucumis sativus Cucsa.135100 N 0.722
Glyma09g03670.1 Glycine max Glyma09g03670.1 N 0.722
GRMZM2G038516 Zea mays GRMZM2G038516 N 0.722
Glyma15g14560.1 Glycine max Glyma15g14560.1 N 0.722
GSVIVG00034941001 Vitis vinifera GSVIVG00034941001 N 0.722