LOC_Os11g35630 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os11g35630 T12433_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os11g35630.1 CCHC ZF 266 283

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os02g06230 Oryza sativa LOC_Os02g06230 N 0.889
LOC_Os12g05310 Oryza sativa LOC_Os12g05310 N 0.889
LOC_Os07g41380 Oryza sativa LOC_Os07g41380 N 0.889
LOC_Os08g29560 Oryza sativa LOC_Os08g29560 N 0.889
ANIA_08557 Aspergillus nidulans CADANIAG00003050 N 0.833
LOC_Os04g40450 Oryza sativa LOC_Os04g40450 N 0.833
BRADI4G42725 Brachypodium distachyon BRADI4G42725 N 0.722
ANIA_02865 Aspergillus nidulans CADANIAG00010225 N 0.722
BRADI3G23364 Brachypodium distachyon BRADI3G23364 N 0.722
fgenesh1_pg.C_scaffold_49000015 Phytophthora ramorum fgenesh1_pg.C_scaffold_49000015 N 0.722
fgenesh1_pg.C_scaffold_32000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_32000002 N 0.722
fgenesh1_pg.C_scaffold_737000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_737000002 N 0.722
fgenesh1_pg.C_scaffold_937000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_937000002 N 0.722
YALI0E14388g1 Yarrowia lipolytica YALI0E14388g1 N 0.722
YALI0E14388g2 Yarrowia lipolytica YALI0E14388g2 N 0.722