cassava15406.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava15406.m1 T13362_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava15406.m1 CCHC ZF 487 504

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava38767.m1 Manihot esculenta cassava38767.m1 N 0.944
cassava4845.m1 Manihot esculenta cassava4845.m1 N 0.889
cassava9619.m1 Manihot esculenta cassava9619.m1 N 0.889
cassava4349.m1 Manihot esculenta cassava4349.m1 N 0.889
cassava33875.m1 Manihot esculenta cassava33875.m1 N 0.889
cassava34578.m1 Manihot esculenta cassava34578.m1 N 0.833
cassava44276.m1 Manihot esculenta cassava44276.m1 N 0.833
cassava16460.m1 Manihot esculenta cassava16460.m1 N 0.833
cassava38763.m1 Manihot esculenta cassava38763.m1 N 0.833
cassava38772.m1 Manihot esculenta cassava38772.m1 N 0.778
cassava9322.m1 Manihot esculenta cassava9322.m1 N 0.778
mgf021643m Mimulus guttatus mgf021643m N 0.722
mgf026139m Mimulus guttatus mgf026139m N 0.722
mgf020201m Mimulus guttatus mgf020201m N 0.722
cassava33793.m1 Manihot esculenta cassava33793.m1 N 0.722
cassava31886.m1 Manihot esculenta cassava31886.m1 N 0.722
mgf019326m Mimulus guttatus mgf019326m N 0.722
mgf020111m Mimulus guttatus mgf020111m N 0.722