cassava9619.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava9619.m1 T13478_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava9619.m1 CCHC ZF 27 44

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava4349.m1 Manihot esculenta cassava4349.m1 N 0.944
cassava38767.m1 Manihot esculenta cassava38767.m1 N 0.944
cassava33875.m1 Manihot esculenta cassava33875.m1 N 0.944
cassava4845.m1 Manihot esculenta cassava4845.m1 N 0.889
cassava15406.m1 Manihot esculenta cassava15406.m1 N 0.889
cassava38763.m1 Manihot esculenta cassava38763.m1 N 0.889
cassava44276.m1 Manihot esculenta cassava44276.m1 N 0.833
cassava16460.m1 Manihot esculenta cassava16460.m1 N 0.833
cassava34578.m1 Manihot esculenta cassava34578.m1 N 0.833
cassava9322.m1 Manihot esculenta cassava9322.m1 N 0.833
cassava38772.m1 Manihot esculenta cassava38772.m1 N 0.778
cassava31886.m1 Manihot esculenta cassava31886.m1 N 0.778
AT1G50810 Arabidopsis thaliana AT1G50810-TAIR-G N 0.722
AT2G15650 Arabidopsis thaliana AT2G15650-TAIR-G N 0.722
cassava33793.m1 Manihot esculenta cassava33793.m1 N 0.722
AT1G35115 Arabidopsis thaliana AT1G35115-TAIR-G N 0.722
cassava3117.m1 Manihot esculenta cassava3117.m1 N 0.722
cassava3938.m1 Manihot esculenta cassava3938.m1 N 0.722