cassava33875.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava33875.m1 T13403_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava33875.m1 CCHC ZF 98 115

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava4349.m1 Manihot esculenta cassava4349.m1 N 0.944
cassava38767.m1 Manihot esculenta cassava38767.m1 N 0.944
cassava9619.m1 Manihot esculenta cassava9619.m1 N 0.944
cassava38763.m1 Manihot esculenta cassava38763.m1 N 0.944
cassava15406.m1 Manihot esculenta cassava15406.m1 N 0.889
cassava4845.m1 Manihot esculenta cassava4845.m1 N 0.889
cassava9322.m1 Manihot esculenta cassava9322.m1 N 0.833
cassava44276.m1 Manihot esculenta cassava44276.m1 N 0.833
cassava34578.m1 Manihot esculenta cassava34578.m1 N 0.833
cassava16460.m1 Manihot esculenta cassava16460.m1 N 0.833
cassava31886.m1 Manihot esculenta cassava31886.m1 N 0.778
cassava38772.m1 Manihot esculenta cassava38772.m1 N 0.778
AT1G35115 Arabidopsis thaliana AT1G35115-TAIR-G N 0.722
SNAP_00038773 Daphnia pulex SNAP_00038773 N 0.722
AT1G50810 Arabidopsis thaliana AT1G50810-TAIR-G N 0.722
cassava33793.m1 Manihot esculenta cassava33793.m1 N 0.722
SNAP_00037736 Daphnia pulex SNAP_00037736 N 0.722
cassava3117.m1 Manihot esculenta cassava3117.m1 N 0.722
AT2G15650 Arabidopsis thaliana AT2G15650-TAIR-G N 0.722
fgenesh1_pg.C_scaffold_386000003 Daphnia pulex fgenesh1_pg.C_scaffold_386000003 N 0.722
fgenesh1_pg.C_scaffold_175000012 Daphnia pulex fgenesh1_pg.C_scaffold_175000012 N 0.722
fgenesh1_pg.C_scaffold_140000007 Daphnia pulex fgenesh1_pg.C_scaffold_140000007 N 0.722
cassava3938.m1 Manihot esculenta cassava3938.m1 N 0.722
fgenesh1_pg.C_scaffold_205000008 Daphnia pulex fgenesh1_pg.C_scaffold_205000008 N 0.722
fgenesh1_pg.C_scaffold_33000112 Daphnia pulex fgenesh1_pg.C_scaffold_33000112 N 0.722
SNAP_00029977 Daphnia pulex SNAP_00029977 N 0.722
SNAP_00020521 Daphnia pulex SNAP_00020521 N 0.722
NCBI_GNO_456000001 Daphnia pulex NCBI_GNO_456000001 N 0.722
SNAP_00031168 Daphnia pulex SNAP_00031168 N 0.722