CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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s_445517
(
Phytophthora sojae
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
s_445517
T14758_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
s_445517
CCHC ZF
229
246
GKCFNCDQVGHMKRDCPE
Links
Other
CCHC ZF
family RBPs
Other
Phytophthora sojae
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
s_445549
Phytophthora sojae
s_445549
N
1.000
s_462797
Phytophthora sojae
s_462797
N
1.000
s_461682
Phytophthora sojae
s_461682
N
1.000
s_464205
Phytophthora sojae
s_464205
N
1.000
s_477701
Phytophthora sojae
s_477701
N
1.000
s_440041
Phytophthora sojae
s_440041
N
1.000
s_517718
Phytophthora sojae
s_517718
N
1.000
s_455924
Phytophthora sojae
s_455924
N
1.000
s_463332
Phytophthora sojae
s_463332
N
1.000
s_452714
Phytophthora sojae
s_452714
N
1.000
s_452594
Phytophthora sojae
s_452594
N
1.000
s_455072
Phytophthora sojae
s_455072
N
0.944
s_473180
Phytophthora sojae
s_473180
N
0.944
s_471643
Phytophthora sojae
s_471643
N
0.944
s_459202
Phytophthora sojae
s_459202
N
0.944
s_439369
Phytophthora sojae
s_439369
N
0.944
s_459016
Phytophthora sojae
s_459016
N
0.944
s_445656
Phytophthora sojae
s_445656
N
0.944
s_446612
Phytophthora sojae
s_446612
N
0.889
fgenesh1_pg.C_scaffold_305000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_305000001
N
0.889
fgenesh1_pg.C_scaffold_2853000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_2853000001
N
0.889
s_469409
Phytophthora sojae
s_469409
N
0.889
s_456636
Phytophthora sojae
s_456636
N
0.889
s_469013
Phytophthora sojae
s_469013
N
0.889
s_466998
Phytophthora sojae
s_466998
N
0.889
s_438716
Phytophthora sojae
s_438716
N
0.833
s_469380
Phytophthora sojae
s_469380
N
0.833
s_455576
Phytophthora sojae
s_455576
N
0.833
s_471430
Phytophthora sojae
s_471430
N
0.778
s_455516
Phytophthora sojae
s_455516
N
0.778
fgenesh1_pg.C_scaffold_999000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_999000001
N
0.778
s_457020
Phytophthora sojae
s_457020
N
0.778
s_477555
Phytophthora sojae
s_477555
N
0.778
s_446687
Phytophthora sojae
s_446687
N
0.778
s_452989
Phytophthora sojae
s_452989
N
0.778
fgenesh1_pg.C_scaffold_373000003
Phytophthora ramorum
fgenesh1_pg.C_scaffold_373000003
N
0.778