CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LIN28A
(
Tarsius syrichta
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
ENSTSYG00000011513
T17056_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000010564
CSD
40
112
GAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGP
Links
Other
CSD
family RBPs
Other
Tarsius syrichta
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LIN28A
Vicugna pacos
ENSVPAG00000008073
N
1.000
LIN28A
Spermophilus tridecemlineatus
ENSSTOG00000004329
N
1.000
LOC100410228
Callithrix jacchus
ENSCJAG00000022770
N
0.959
LIN28B
Choloepus hoffmanni
ENSCHOG00000001682
N
0.824
ENSOCUG00000011640
Oryctolagus cuniculus
ENSOCUG00000011640
N
0.808
LIN28A
Otolemur garnettii
ENSOGAG00000003971
N
0.762
lin28a
Danio rerio
ENSDARG00000016999
I
0.743
Lin28b
Mus musculus
ENSMUSG00000063804
I
0.712