lin28a (Danio rerio)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSDARG00000016999 T06776_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.827
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.827
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000019558 CSD 33 106
ENSDARP00000019558 CCHC ZF 129 145
ENSDARP00000019558 CCHC ZF 151 168
ENSDARP00000089741 CSD 27 100
ENSDARP00000089741 CCHC ZF 123 139
ENSDARP00000089741 CCHC ZF 145 162
ENSDARP00000101140 CSD 38 102

Links

Other CCHC ZF,CSD family RBPs
Other Danio rerio RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LN28A_CHICK Gallus gallus ENSGALG00000000388 I 0.864
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.864
LIN28A Oryzias latipes ENSORLG00000014369 I 0.845
LIN28A Takifugu rubripes ENSTRUG00000006069 I 0.845
LIN28A Gasterosteus aculeatus ENSGACG00000007826 I 0.844
LIN28A Gasterosteus aculeatus ENSGACG00000013893 I 0.836
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.827
LIN28A Myotis lucifugus ENSMLUG00000010158 I 0.827
LIN28A Macropus eugenii ENSMEUG00000008743 I 0.827
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.827
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.827
Lin28 Rattus norvegicus ENSRNOG00000015384 I 0.827
ENSPPYG00000001684 Pongo pygmaeus ENSPPYG00000001684 I 0.827
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.827
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.827
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.827
Ame_R001082 Ailuropoda melanoleuca Ame_R001082 I 0.827
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.827
LIN28 Equus caballus ENSECAG00000020267 I 0.827
LIN28A Canis familiaris ENSCAFG00000012488 I 0.827
LIN28A Homo sapiens ENSG00000131914 D 0.827
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.827
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.827
LIN28A Felis catus ENSFCAG00000012810 I 0.827
LOC100405014 Callithrix jacchus ENSCJAG00000009796 I 0.827
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.826
XR_023903.1 Pan troglodytes ENSPTRG00000000384 I 0.818
LIN28A Sus scrofa ENSSSCG00000003557 I 0.818
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.818
LIN28A Bos taurus ENSBTAG00000040497 I 0.818
Lin28a Mus musculus ENSMUSG00000050966 I 0.818
LIN28B Microcebus murinus ENSMICG00000002297 I 0.817
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.817
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.817
LOC100066260 Equus caballus ENSECAG00000020994 I 0.817
LIN28B Sorex araneus ENSSARG00000008374 I 0.817
Ame_R004947 Ailuropoda melanoleuca Ame_R004947 I 0.817
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.817
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.817
LOC100400137 Callithrix jacchus ENSCJAG00000001671 I 0.817
LIN28B Tarsius syrichta ENSTSYG00000006480 I 0.817
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.817
lin28a Xenopus tropicalis ENSXETG00000012324 I 0.809
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.809
LIN28B Canis familiaris ENSCAFG00000003598 I 0.807
ENSPPYG00000016875 Pongo pygmaeus ENSPPYG00000016875 I 0.807
LIN28B Homo sapiens ENSG00000187772 I 0.807
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.807
Lin28b Mus musculus ENSMUSG00000063804 I 0.807
LIN28B Echinops telfairi ENSETEG00000015340 I 0.807
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.807
Q8JHC4 Xenopus laevis Q8JHC4 I 0.800
AAM77750 Xenopus laevis AAM77750 I 0.800
AAI69597 Xenopus laevis AAI69597 I 0.800
LIN28A Danio rerio ENSDARG00000004328 I 0.800
AAI69625 Xenopus laevis AAI69625 I 0.800
LN28B_CHICK Gallus gallus ENSGALG00000015411 I 0.798
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.798
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.798
Q8AVK2 Xenopus laevis Q8AVK2 I 0.798
AAH42225 Xenopus laevis AAH42225 I 0.798
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.798
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.798
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.791
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.791
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.789
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.789
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.789
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.789
LIN28A Procavia capensis ENSPCAG00000013674 I 0.773
LIN28B Oryzias latipes ENSORLG00000012891 I 0.771
LIN28A Tetraodon nigroviridis ENSTNIG00000009802 I 0.761
LIN28A Takifugu rubripes ENSTRUG00000009454 I 0.761
LOC100406610 Callithrix jacchus ENSCJAG00000021979 I 0.755
LIN28B Choloepus hoffmanni ENSCHOG00000001682 N 0.743
LIN28A Spermophilus tridecemlineatus ENSSTOG00000004329 N 0.743
LIN28A Tarsius syrichta ENSTSYG00000011513 N 0.743
LIN28A Vicugna pacos ENSVPAG00000008073 N 0.743
LOC100410228 Callithrix jacchus ENSCJAG00000022770 N 0.716