Lin28b (Mus musculus)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSMUSG00000063804 T06810_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.827
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.827
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000078361 CSD 27 100
ENSMUSP00000078361 CCHC ZF 149 165
ENSMUSP00000078361 CCHC ZF 171 188
ENSMUSP00000097434 CSD 52 90
ENSMUSP00000097436 CSD 1 62
ENSMUSP00000101128 CSD 27 100
ENSMUSP00000101128 CCHC ZF 125 141
ENSMUSP00000101128 CCHC ZF 147 164

Links

Other CCHC ZF,CSD family RBPs
Other Mus musculus RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.982
LIN28B Tarsius syrichta ENSTSYG00000006480 I 0.982
LOC100066260 Equus caballus ENSECAG00000020994 I 0.972
LIN28B Echinops telfairi ENSETEG00000015340 I 0.972
LOC100400137 Callithrix jacchus ENSCJAG00000001671 I 0.972
LIN28B Microcebus murinus ENSMICG00000002297 I 0.963
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.963
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.963
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.963
ENSPPYG00000016875 Pongo pygmaeus ENSPPYG00000016875 I 0.963
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.963
LIN28B Homo sapiens ENSG00000187772 I 0.963
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.963
Ame_R004947 Ailuropoda melanoleuca Ame_R004947 I 0.963
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.963
LIN28B Sorex araneus ENSSARG00000008374 I 0.954
LIN28B Canis familiaris ENSCAFG00000003598 I 0.954
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.954
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.945
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.945
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.936
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.927
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.927
LN28B_CHICK Gallus gallus ENSGALG00000015411 I 0.917
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.908
Q8AVK2 Xenopus laevis Q8AVK2 I 0.881
AAH42225 Xenopus laevis AAH42225 I 0.881
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.844
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.844
LN28A_CHICK Gallus gallus ENSGALG00000000388 I 0.836
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.836
LIN28A Takifugu rubripes ENSTRUG00000006069 I 0.836
LIN28A Oryzias latipes ENSORLG00000014369 I 0.836
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.835
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.827
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.827
Ame_R001082 Ailuropoda melanoleuca Ame_R001082 I 0.827
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.827
LIN28A Gasterosteus aculeatus ENSGACG00000013893 I 0.827
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.827
LIN28A Homo sapiens ENSG00000131914 D 0.827
LIN28A Myotis lucifugus ENSMLUG00000010158 I 0.827
LIN28 Equus caballus ENSECAG00000020267 I 0.827
ENSPPYG00000001684 Pongo pygmaeus ENSPPYG00000001684 I 0.827
LOC100405014 Callithrix jacchus ENSCJAG00000009796 I 0.827
LIN28A Canis familiaris ENSCAFG00000012488 I 0.827
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.827
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.827
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.827
LIN28A Macropus eugenii ENSMEUG00000008743 I 0.827
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.827
Lin28a Mus musculus ENSMUSG00000050966 I 0.827
LIN28A Felis catus ENSFCAG00000012810 I 0.827
Lin28 Rattus norvegicus ENSRNOG00000015384 I 0.827
LIN28A Bos taurus ENSBTAG00000040497 I 0.827
LIN28A Sus scrofa ENSSSCG00000003557 I 0.827
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.827
XR_023903.1 Pan troglodytes ENSPTRG00000000384 I 0.818
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.818
LIN28B Oryzias latipes ENSORLG00000012891 I 0.817
LIN28A Danio rerio ENSDARG00000004328 I 0.809
lin28a Danio rerio ENSDARG00000016999 I 0.807
lin28a Xenopus tropicalis ENSXETG00000012324 I 0.791
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.791
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.791
LIN28B Choloepus hoffmanni ENSCHOG00000001682 N 0.784
LIN28A Procavia capensis ENSPCAG00000013674 I 0.782
LOC100406610 Callithrix jacchus ENSCJAG00000021979 I 0.773
LIN28A Gasterosteus aculeatus ENSGACG00000007826 I 0.771
AAI69597 Xenopus laevis AAI69597 I 0.764
AAI69625 Xenopus laevis AAI69625 I 0.764
AAM77750 Xenopus laevis AAM77750 I 0.764
Q8JHC4 Xenopus laevis Q8JHC4 I 0.764
LIN28A Takifugu rubripes ENSTRUG00000009454 I 0.761
LIN28A Tetraodon nigroviridis ENSTNIG00000009802 I 0.743
LIN28A Tarsius syrichta ENSTSYG00000011513 N 0.712
LIN28A Spermophilus tridecemlineatus ENSSTOG00000004329 N 0.712
LIN28A Vicugna pacos ENSVPAG00000008073 N 0.712