YBX2 (Tursiops truncatus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSTTRG00000009780 T17060_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.833
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.817
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.817
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.806
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.806
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.806
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000009273 CSD 95 158

Links

Other CSD family RBPs
Other Tursiops truncatus RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YBX2 Echinops telfairi ENSETEG00000014271 I 1.000
Ybx2 Dipodomys ordii ENSDORG00000010882 I 1.000
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.938
CSDA Microcebus murinus ENSMICG00000004602 I 0.848
CSDA Vicugna pacos ENSVPAG00000000876 I 0.848
Ybx2 Mus musculus ENSMUSG00000018554 I 0.806
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.795
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.792
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.781
YBX2 Procavia capensis ENSPCAG00000008019 I 0.781
YBX2 Homo sapiens ENSG00000006047 D 0.781
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.781
YBX2 Canis familiaris ENSCAFG00000016128 I 0.781
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.781
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.781
YBX2 Sus scrofa ENSSSCG00000017938 I 0.781
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.781
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.781
LOC100072964 Equus caballus ENSECAG00000009996 I 0.781
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.781
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.781
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.767
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.767
YBX2 Sorex araneus ENSSARG00000000488 I 0.767
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.764
AAI55915 Xenopus laevis AAI55915 I 0.753
AAI69704 Xenopus laevis AAI69704 I 0.753
ybx2-a Xenopus laevis AAI69706 D 0.753
P21574 Xenopus laevis P21574 I 0.753
AAA49716 Xenopus laevis AAA49716 I 0.753
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.750
Ybx1 Mus musculus ENSMUSG00000028639 I 0.740
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.740
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.740
CSDA Loxodonta africana ENSLAFG00000017247 I 0.740
YBX1 Microcebus murinus ENSMICG00000014984 I 0.740
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.740
CSDA Macaca mulatta ENSMMUG00000022469 I 0.740
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.740
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.740
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.740
CSDA Sus scrofa ENSSSCG00000000633 I 0.740
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.740
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.740
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.740
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.740
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.740
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.740
Csda Rattus norvegicus ENSRNOG00000005480 I 0.740
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.740
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.740
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.740
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.740
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.740
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.740
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.740
CSDA Pan troglodytes ENSPTRG00000004681 I 0.740
Csda Mus musculus ENSMUSG00000030189 I 0.740
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.740
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.740
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.740
Q00436 Xenopus laevis Q00436 I 0.740
P45441 Xenopus laevis P45441 I 0.740
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.740
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.740
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.740
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.740
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.740
P21573 Xenopus laevis P21573 I 0.740
CAA42778 Xenopus laevis CAA42778 I 0.740
AAA49924 Xenopus laevis AAA49924 I 0.740
AAA49715 Xenopus laevis AAA49715 I 0.740
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.740
AAH41191 Xenopus laevis AAH41191 I 0.740
AAH42217 Xenopus laevis AAH42217 I 0.740
AAI55914 Xenopus laevis AAI55914 I 0.740
AAI30161 Xenopus laevis AAI30161 I 0.740
AAI06324 Xenopus laevis AAI06324 I 0.740
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.740
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.740
LOC100065107 Equus caballus ENSECAG00000013777 I 0.740
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.740
YB-1 Homo sapiens ENSG00000065978 D 0.740
LOC100067336 Equus caballus ENSECAG00000023592 I 0.740
CSDA Cavia porcellus ENSCPOG00000011329 I 0.740
CSDA Echinops telfairi ENSETEG00000002557 I 0.740
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.740
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.740
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.740
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.740
ybx1 Danio rerio ENSDARG00000004757 I 0.740
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.740
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.740
Csda Dipodomys ordii ENSDORG00000009103 I 0.740
CSDA Homo sapiens ENSG00000060138 I 0.740
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.736
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.736
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.726
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.726
CSDA Monodelphis domestica ENSMODG00000018248 I 0.726
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.726
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.726
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.726
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.726
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.726
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.726
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.722
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.712
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.706