YBX1 (Dasypus novemcinctus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSDNOG00000014149 T16816_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.845
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.845
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.778
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.778
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.778
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.778
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDNOP00000010983 CSD 54 117

Links

Other CSD family RBPs
Other Dasypus novemcinctus RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YBX2 Echinops telfairi ENSETEG00000014271 I 0.938
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.938
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.938
CSDA Microcebus murinus ENSMICG00000004602 I 0.879
CSDA Vicugna pacos ENSVPAG00000000876 I 0.879
Csda Dipodomys ordii ENSDORG00000009103 I 0.767
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.767
CSDA Cavia porcellus ENSCPOG00000011329 I 0.767
CSDA Sus scrofa ENSSSCG00000000633 I 0.767
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.767
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.767
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.767
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.767
ybx1 Danio rerio ENSDARG00000004757 I 0.767
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.767
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.767
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.767
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.767
CSDA Pan troglodytes ENSPTRG00000004681 I 0.767
Csda Rattus norvegicus ENSRNOG00000005480 I 0.767
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.767
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.767
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.767
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.767
P21573 Xenopus laevis P21573 I 0.767
CAA42778 Xenopus laevis CAA42778 I 0.767
AAI30161 Xenopus laevis AAI30161 I 0.767
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.767
Q00436 Xenopus laevis Q00436 I 0.767
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.767
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.767
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.767
AAI06324 Xenopus laevis AAI06324 I 0.767
AAH42217 Xenopus laevis AAH42217 I 0.767
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.767
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.767
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.767
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.767
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.767
AAH41191 Xenopus laevis AAH41191 I 0.767
AAA49715 Xenopus laevis AAA49715 I 0.767
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.767
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.767
Csda Mus musculus ENSMUSG00000030189 I 0.767
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.767
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.767
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.767
CSDA Loxodonta africana ENSLAFG00000017247 I 0.767
YBX1 Microcebus murinus ENSMICG00000014984 I 0.767
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.767
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.767
YB-1 Homo sapiens ENSG00000065978 D 0.767
LOC100067336 Equus caballus ENSECAG00000023592 I 0.767
LOC100065107 Equus caballus ENSECAG00000013777 I 0.767
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.767
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.767
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.767
CSDA Homo sapiens ENSG00000060138 I 0.767
CSDA Echinops telfairi ENSETEG00000002557 I 0.767
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.767
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.767
Ybx1 Mus musculus ENSMUSG00000028639 I 0.767
CSDA Macaca mulatta ENSMMUG00000022469 I 0.767
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.767
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.767
CSDA Monodelphis domestica ENSMODG00000018248 I 0.753
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.753
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.753
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.753
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.753
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.753
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.753
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.753
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.753
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.753
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.753
Ybx2 Mus musculus ENSMUSG00000018554 I 0.750
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.750
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.740
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.736
AAI55915 Xenopus laevis AAI55915 I 0.726
AAI69704 Xenopus laevis AAI69704 I 0.726
ybx2-a Xenopus laevis AAI69706 D 0.726
YBX2 Procavia capensis ENSPCAG00000008019 I 0.726
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.726
LOC100072964 Equus caballus ENSECAG00000009996 I 0.726
YBX2 Canis familiaris ENSCAFG00000016128 I 0.726
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.726
P21574 Xenopus laevis P21574 I 0.726
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.726
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.726
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.726
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.726
csda Xenopus tropicalis ENSXETG00000016239 I 0.726
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.726
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.726
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.726
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.726
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.726
YBX2 Homo sapiens ENSG00000006047 D 0.726
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.726
AAA49716 Xenopus laevis AAA49716 I 0.726
YBX2 Sus scrofa ENSSSCG00000017938 I 0.726
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.726
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.722
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.722
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.722
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.712
YBX2 Sorex araneus ENSSARG00000000488 I 0.712
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.712
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.712
AAA49924 Xenopus laevis AAA49924 I 0.712
AAI55914 Xenopus laevis AAI55914 I 0.712
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.712
P45441 Xenopus laevis P45441 I 0.712
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.708
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.708
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.708
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.708
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.708
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.708
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.708
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.706
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.704