CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
amel4_ncbi_hmm3083
(
Apis mellifera
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
amel4_ncbi_hmm3083
T17986_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
amel4_ncbi_hmm3083
KH
97
180
SVKVLVPVREHPKFNFVGKLLGPKGNSMKRLQEETMCKMAVLGRGSMKDRQKEEEYRMSLDPKYAHLSDDLHVEITALAPPAEA
Links
Other
KH
family RBPs
Other
Apis mellifera
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm272534
Nasonia vitripennis
nasonia_NCBI_hmm272534
N
0.931
BGIBMGA014155
Bombyx mori
BGIBMGA014155
N
0.795
GA18453-RA
Drosophila pseudoobscura
FBgn0078455
N
0.786
GM21780
Drosophila sechellia
FBgn0176658
N
0.786
GF13124
Drosophila ananassae
FBgn0090157
N
0.786
GD11271
Drosophila simulans
FBgn0183021
N
0.786
qkr54B
Drosophila melanogaster
FBgn0022987
N
0.786
GE11667
Drosophila yakuba
FBgn0229463
N
0.786
GK22901
Drosophila willistoni
FBgn0224863
N
0.786
GG20683
Drosophila erecta
FBgn0112870
N
0.786
GL11428
Drosophila persimilis
FBgn0149037
N
0.786
GJ20374
Drosophila virilis
FBgn0207514
N
0.776
GI18580
Drosophila mojavensis
FBgn0141319
N
0.776
GH21401
Drosophila grimshawi
FBgn0128863
N
0.776
AGAP003356
Anopheles gambiae
AGAP003356
N
0.762
GK17902
Drosophila willistoni
FBgn0219901
N
0.761
GJ19910
Drosophila virilis
FBgn0207052
N
0.761
GH21368
Drosophila grimshawi
FBgn0128830
N
0.761
AAEL009694
Aedes aegypti
AAEL009694
N
0.750
DGIL_AUG5s14032g4t1
Acyrtosiphon pisum
DGIL_AUG5s14032g4t1
N
0.747
CPIJ014324
Culex quinquefasciatus
CPIJ014324
N
0.747
CpipJ_CPIJ014324
Culex pipiens
CpipJ_CPIJ014324
N
0.747
GE13991
Drosophila yakuba
FBgn0231623
N
0.727
CG10384
Drosophila melanogaster
FBgn0034731
N
0.727
GF11894
Drosophila ananassae
FBgn0088934
N
0.727
GI20563
Drosophila mojavensis
FBgn0143299
N
0.727
GG21049
Drosophila erecta
FBgn0113232
N
0.727
GM15914
Drosophila sechellia
FBgn0170830
N
0.727
GA10291-RA
Drosophila pseudoobscura
FBgn0070349
N
0.716