CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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An18g06710
(
Aspergillus niger
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
CADANGAG00014311
T18204_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANGAP00014042
KH
184
232
SRAIGRCAGKDGRTKFAIENATRTRIVIADQKIHLLGAVKNVDCAQQAI
Links
Other
KH
family RBPs
Other
Aspergillus niger
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pm.00129_#_16
Aspergillus carbonarius
fgenesh1_pm.00129_#_16
N
1.000
estExt_fgenesh1_kg.C_140013
Cochliobolus heterostrophus C5
estExt_fgenesh1_kg.C_140013
N
0.720
e_gw1.3.1059.1
Mycosphaerella fijiensis
e_gw1.3.1059.1
N
0.720
Pc14g01220
Penicillium chrysogenum
Pc14g01220
N
0.714
WUBG_12774
Wuchereria bancrofti
WUBG_12774
N
0.700
LOAG_05624
Loa loa
LOAG_05624
N
0.700
PGUG_02960
Candida guilliermondii
PGUG_02960
N
0.700
Bm1_42995
Brugia malayi
Bm1_42995
N
0.700
EDP42908.1
Malassezia globosa
EDP42908.1
N
0.700
ATEG_07413
Aspergillus terreus
CADATEAG00001505
N
0.700
THAPSDRAFT_35041
Thalassiosira pseudonana
Thaps35041
N
0.700
ANIA_05785
Aspergillus nidulans
CADANIAG00003265
N
0.700