CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pc14g01220
(
Penicillium chrysogenum
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
Pc14g01220
T21914_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pc14g01220.t1
KH
180
228
GRAIGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFKNIHIAREAI
Links
Other
KH
family RBPs
Other
Penicillium chrysogenum
RBPs
169 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTRG_02803
Pyrenophora tritici repentis
PTRG_02803
N
0.980
BC1G_12211
Botrytis cinerea
BC1G_12211
N
0.980
SS1G_04290
Sclerotinia sclerotiorum
SS1G_04290
N
0.980
MCYG_07269
Microsporum canis
MCYG_07269
N
0.959
CPSG_08784
Coccidioides posadasii
CPSG_08784
N
0.959
CIMG_07268
Coccidioides immitis
CIMG_07268
N
0.959
MGYG_04767
Microsporum gypseum
MGYG_04767
N
0.959
HCAG_04100
Histoplasma capsulatum
HCAG_04100
N
0.959
SNOG_03777
Stagonospora nodorum
SNOG_03777
N
0.959
EAT88982.1
Phaeosphaeria nodorum
EAT88982.1
N
0.959
TESG_04215
Trichophyton tonsurans
TESG_04215
N
0.959
TERG_01665
Trichophyton rubrum
TERG_01665
N
0.959
TEQG_07954
Trichophyton equinum
TEQG_07954
N
0.959
ARB_00984
Arthroderma benhamiae
ARB_00984
N
0.959
TRV_03730
Trichophyton verrucosum
TRV_03730
N
0.959
PABG_01374
Paracoccidioides brasiliensis
PABG_01374
N
0.939
YALI0E01122g
Yarrowia lipolytica
YALI0E01122g
N
0.939
UREG_07832
Uncinocarpus reesii
UREG_07832
N
0.939
BDBG_01721
Blastomyces dermatitidis
BDBG_01721
N
0.939
estExt_fgenesh1_kg.C_140013
Cochliobolus heterostrophus C5
estExt_fgenesh1_kg.C_140013
N
0.920
e_gw1.3.1059.1
Mycosphaerella fijiensis
e_gw1.3.1059.1
N
0.880
FOXG_00036
Fusarium oxysporum
FOXG_00036
N
0.860
FGSG_01345
Fusarium graminearum
FGSG_01345
N
0.860
estExt_Genewise1Plus.C_chr_70397
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_70397
N
0.860
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036
Nectria haematococca
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036
N
0.860
FVEG_01480
Fusarium verticillioides
FVEG_01480
N
0.860
e_gw1.3.2749.1
Cryphonectria parasitica
e_gw1.3.2749.1
N
0.837
estExt_Genewise1Plus.C_91132
Trichoderma virens
estExt_Genewise1Plus.C_91132
N
0.820
fgenesh1_pm.C_scaffold_14000035
Trichoderma atroviride
fgenesh1_pm.C_scaffold_14000035
N
0.820
estExt_fgenesh5_pg.C_40050
Trichoderma reesei
estExt_fgenesh5_pg.C_40050
N
0.820
GSTUMT00003923001
Tuber melanosporum
GSTUMT00003923001
N
0.816
GLRG_03940
Colletotrichum graminicola
GLRG_03940
N
0.808
SAKL0G03740g
Lachancea kluyveri
SAKL0G03740g
N
0.800
CLUG_01545
Candida lusitaniae
CLUG_01545
N
0.800
fgenesh3_pm.54__15
Postia placenta
fgenesh3_pm.54__15
N
0.800
LELG_05249
Lodderomyces elongisporus
LELG_05249
N
0.800
estExt_genewise1_human.C_chr_1.20929
Pichia stipitis
estExt_genewise1_human.C_chr_1.20929
N
0.800
CAGL0K09460g
Candida glabrata
CAGL0K09460g
N
0.800
Cd36_35296
Candida dubliniensis
Cd36_35296
N
0.800
A7THL8_VANPO
Vanderwaltozyma polyspora
A7THL8_VANPO
N
0.800
Scas_Contig632.19
Saccharomyces castellii
Scas_Contig632.19
N
0.800
CPAG_01545
Candida parapsilosis
CPAG_01545
N
0.800
orf19.7618
Candida albicans
orf19.7618
N
0.800
CTRG_05813
Candida tropicalis
CTRG_05813
N
0.800
e_gww2.1.865.1
Phanerochaete chrysosporium
e_gww2.1.865.1
N
0.800
ZYRO0D11440g
Zygosaccharomyces rouxii
ZYRO0D11440g
N
0.800
DEHA0G05258g
Debaryomyces hansenii
DEHA0G05258g
N
0.800
gw1.1.2472.1
Pleurotus ostreatus
gw1.1.2472.1
N
0.780
PGUG_02960
Candida guilliermondii
PGUG_02960
N
0.780
Skud_Contig1833.8
Saccharomyces kudriavzevii
Skud_Contig1833.8
N
0.780
23888_YOR145C
Saccharomyces bayanus
23888_YOR145C
N
0.780
Kwal_18864
Kluyveromyces waltii
Kwal_18864
N
0.780
20872_YOR145C
Saccharomyces paradoxus
20872_YOR145C
N
0.780
PNO1
Ashbya gossypii
PNO1
N
0.780
e_gw1.12.287.1
Serpula lacrymans
e_gw1.12.287.1
N
0.780
KLLA0C06446g
Kluyveromyces lactis
KLLA0C06446g
N
0.780
ACLA_088200
Aspergillus clavatus
CADACLAG00008695
N
0.780
SPOG_00402
Schizosaccharomyces cryophilus
SPOG_00402
N
0.780
PNO1
Saccharomyces cerevisiae
YOR145C
N
0.780
KLTH0G02574g
Kluyveromyces thermotolerans
KLTH0G02574g
N
0.780
rbp28
Schizosaccharomyces pombe
SPAC2C4.11c
N
0.780
3712.m00082
Tetrahymena thermophila
3712.m00082
N
0.776
SPPG_04498
Spizellomyces punctatus
SPPG_04498
N
0.776
UM03495
Ustilago maydis
UM03495
N
0.776
estExt_Genewise1Plus.C_250095
Phycomyces blakesleeanus
estExt_Genewise1Plus.C_250095
N
0.776
20359_YOR145C
Saccharomyces mikatae
20359_YOR145C
N
0.765
estExt_Genewise1Plus.C_10658
Mucor circinelloides
estExt_Genewise1Plus.C_10658
N
0.760
PMAA_046470
Penicillium marneffei
PMAA_046470
N
0.760
e_gw1.2.756.1
Heterobasidion annosum
e_gw1.2.756.1
N
0.760
RO3G_00885
Rhizopus oryzae
RO3G_00885
N
0.760
e_gw1.2.2126.1
Schizophyllum commune
e_gw1.2.2126.1
N
0.760
ATEG_07413
Aspergillus terreus
CADATEAG00001505
N
0.760
RO3G_05288
Rhizopus oryzae
RO3G_05288
N
0.760
SJAG_03872
Schizosaccharomyces japonicus
SJAG_03872
N
0.760
GP3.070330
Batrachochytrium dendrobatidis
GP3.070330
N
0.755
MGG_05136
Magnaporthe oryzae
MGG_05136
N
0.755
Pa_3_1680
Podospora anserina
Pa_3_1680
N
0.755
PNO1
Taeniopygia guttata
ENSTGUG00000002369
N
0.740
PTTG_01898
Puccinia triticina
PTTG_01898
N
0.740
estExt_Genewise1.C_260084
Melampsora laricis populina
estExt_Genewise1.C_260084
N
0.740
XP_798188.2
Strongylocentrotus purpuratus
XP_798188.2
N
0.740
PITG_01680
Phytophthora infestans
PITG_01680
N
0.740
estExt_fgenesh2_kg.C_20130
Agaricus bisporus
estExt_fgenesh2_kg.C_20130
N
0.740
pno1
Xenopus tropicalis
ENSXETG00000017349
N
0.740
e_gw1.8.261.1
Sporobolomyces roseus
e_gw1.8.261.1
N
0.740
e_gwh1.2.512.1
Laccaria bicolor
e_gwh1.2.512.1
N
0.740
XP_791733.2
Strongylocentrotus purpuratus
XP_791733.2
N
0.740
SOCG_04140
Schizosaccharomyces octosporus
SOCG_04140
N
0.740
s_468317
Phytophthora sojae
s_468317
N
0.740
estExt_Genewise1Plus.C_10659
Myceliophthora thermophila
estExt_Genewise1Plus.C_10659
N
0.740
AFUA_6G06430
Aspergillus fumigatus
CADAFUAG00001979
N
0.740
PNO1_CHICK
Gallus gallus
ENSGALG00000009093
N
0.740
NFIA_052070
Neosartorya fischeri
CADNFIAG00004473
N
0.740
fgenesh1_pm.C_scaffold_5000030
Phytophthora ramorum
fgenesh1_pm.C_scaffold_5000030
N
0.740
PNO1
Meleagris gallopavo
ENSMGAG00000004514
N
0.740
XP_001202155.1
Strongylocentrotus purpuratus
XP_001202155.1
N
0.740
SPRG_02415
Saprolegnia parasitica
SPRG_02415
N
0.740
XP_001202160.1
Strongylocentrotus purpuratus
XP_001202160.1
N
0.740
estExt_Genewise1Plus.C_430054
Neurospora tetrasperma
estExt_Genewise1Plus.C_430054
N
0.735
NCU07956
Neurospora crassa
NCU07956
N
0.735
e_gw1.3.666.1
Neurospora discreta
e_gw1.3.666.1
N
0.735
EDP42908.1
Malassezia globosa
EDP42908.1
N
0.720
Ame_R013855
Ailuropoda melanoleuca
Ame_R013855
N
0.720
estExt_fgenesh1_pg.C_190237
Phytophthora capsici
estExt_fgenesh1_pg.C_190237
N
0.720
estExt_Genewise1.C_10689
Thielavia terrestris
estExt_Genewise1.C_10689
N
0.720
PNO1
Ornithorhynchus anatinus
ENSOANG00000008388
N
0.720
PNO1
Gorilla gorilla
ENSGGOG00000009158
N
0.720
PNO1
Homo sapiens
ENSG00000115946
N
0.720
PNO1
Erinaceus europaeus
ENSEEUG00000009611
N
0.720
LOC100061904
Equus caballus
ENSECAG00000011263
N
0.720
PNO1
Loxodonta africana
ENSLAFG00000000046
N
0.720
PNO1
Macropus eugenii
ENSMEUG00000004504
N
0.720
XM_001095777.1
Macaca mulatta
ENSMMUG00000030357
N
0.720
Q7YRC8_MACMU
Macaca mulatta
ENSMMUG00000017461
N
0.720
PNO1
Myotis lucifugus
ENSMLUG00000010850
N
0.720
Pno1
Dipodomys ordii
ENSDORG00000006867
N
0.720
pno1
Danio rerio
ENSDARG00000008502
N
0.720
ANIA_05785
Aspergillus nidulans
CADANIAG00003265
N
0.720
AMAG_14219
Allomyces macrogynus
AMAG_14219
N
0.720
AMAG_12889
Allomyces macrogynus
AMAG_12889
N
0.720
XP_002162789.1
Hydra magnipapillata
XP_002162789.1
N
0.720
PNO1
Anolis carolinensis
ENSACAG00000001218
N
0.720
PNO1_BOVIN
Bos taurus
ENSBTAG00000010604
N
0.720
PNO1
Cavia porcellus
ENSCPOG00000010130
N
0.720
LOC100389955
Callithrix jacchus
ENSCJAG00000006564
N
0.720
PNO1
Canis familiaris
ENSCAFG00000003256
N
0.720
PNO1
Monodelphis domestica
ENSMODG00000003567
N
0.720
PNO1
Microcebus murinus
ENSMICG00000010897
N
0.720
PNO1
Pan troglodytes
ENSPTRG00000011999
N
0.720
ENSPPYG00000012353
Pongo pygmaeus
ENSPPYG00000012353
N
0.720
Q6VBQ6_ORYLA
Oryzias latipes
ENSORLG00000002371
N
0.720
PNO1
Ochotona princeps
ENSOPRG00000009643
N
0.720
PNO1
Pteropus vampyrus
ENSPVAG00000012695
N
0.720
Pno1
Rattus norvegicus
ENSRNOG00000005524
N
0.720
PNO1
Vicugna pacos
ENSVPAG00000012083
N
0.720
PNO1
Tursiops truncatus
ENSTTRG00000014002
N
0.720
PNO1
Sus scrofa
ENSSSCG00000008352
N
0.720
ENSOCUG00000022236
Oryctolagus cuniculus
ENSOCUG00000022236
N
0.720
PNO1
Procavia capensis
ENSPCAG00000016146
N
0.720
ENSOCUG00000006100
Oryctolagus cuniculus
ENSOCUG00000006100
N
0.720
fgenesh1_pm.00129_#_16
Aspergillus carbonarius
fgenesh1_pm.00129_#_16
N
0.714
An18g06710
Aspergillus niger
CADANGAG00014311
N
0.714
194870
Helobdella robusta
194870
N
0.714
CNBG_1323
Cryptococcus neoformans
CNBG_1323
N
0.714
AO090003000014
Aspergillus oryzae
CADAORAG00000701
N
0.706
AFLA_037860
Aspergillus flavus
CADAFLAG00003159
N
0.706
LjSGA_017760.2
Lotus japonicus
LjSGA_017760.2
N
0.700
fgeneshCV_pg.C_scaffold_11000142
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_11000142
N
0.700
Chlre2_kg.scaffold_20000177
Chlamydomonas reinhardtii
Chlre2_kg.scaffold_20000177
N
0.700
AAH42279
Xenopus laevis
AAH42279
N
0.700
GSPATP00020703001
Paramecium tetraurelia
GSPATP00020703001
N
0.700
THAPSDRAFT_35041
Thalassiosira pseudonana
Thaps35041
N
0.700
Q8AVH4
Xenopus laevis
Q8AVH4
N
0.700
AAQ24169
Xenopus laevis
AAQ24169
N
0.700
GSPATP00021981001
Paramecium tetraurelia
GSPATP00021981001
N
0.700
Genemark1.5719_g
Coccomyxa C 169
Genemark1.5719_g
N
0.700
PNO1
Tetraodon nigroviridis
ENSTNIG00000009825
N
0.700
fgenesh2_pm.scaffold_78000001
Branchiostoma floridae
fgenesh2_pm.scaffold_78000001
N
0.700
Glyma08g44800.1
Glycine max
Glyma08g44800.1
N
0.700
fgenesh2_pg.scaffold_196000015
Branchiostoma floridae
fgenesh2_pg.scaffold_196000015
N
0.700
estExt_Genewise1Plus.C_600117
Volvox carteri
estExt_Genewise1Plus.C_600117
N
0.700
Pno1
Mus musculus
ENSMUSG00000020116
N
0.700
Glyma18g08080.1
Glycine max
Glyma18g08080.1
N
0.700
Glyma18g08100.1
Glycine max
Glyma18g08100.1
N
0.700
PNO1
Takifugu rubripes
ENSTRUG00000012470
N
0.700
fgenesh1_pg.scaffold_18000119
Nematostella vectensis
fgenesh1_pg.scaffold_18000119
N
0.700
estExt_Genewise1.C_5820041
Capitella teleta
estExt_Genewise1.C_5820041
N
0.700
cassava7030.valid.m1
Manihot esculenta
cassava7030.valid.m1
N
0.700
e_gw1.15.315.1
Tremella mesenterica
e_gw1.15.315.1
N
0.700