THAPSDRAFT_35041 (Thalassiosira pseudonana)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 Thaps35041 T20311_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Thaps35041 KH 132 181

Links

Other KH family RBPs
Other Thalassiosira pseudonana RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PHATRDRAFT_9929 Phaeodactylum tricornutum Phatr9929 N 0.840
fgenesh2_pm.11_#_145 Fragilariopsis cylindrus fgenesh2_pm.11_#_145 N 0.840
fgenesh1_pm.C_scaffold_5000030 Phytophthora ramorum fgenesh1_pm.C_scaffold_5000030 N 0.800
s_468317 Phytophthora sojae s_468317 N 0.800
PITG_01680 Phytophthora infestans PITG_01680 N 0.800
estExt_fgenesh1_pg.C_190237 Phytophthora capsici estExt_fgenesh1_pg.C_190237 N 0.800
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.780
GSPATP00020703001 Paramecium tetraurelia GSPATP00020703001 N 0.760
27316 Aureococcus anophagefferens 27316 N 0.760
GSPATP00021981001 Paramecium tetraurelia GSPATP00021981001 N 0.760
e_gww2.1.865.1 Phanerochaete chrysosporium e_gww2.1.865.1 N 0.740
fgenesh3_pm.54__15 Postia placenta fgenesh3_pm.54__15 N 0.740
SPPG_04498 Spizellomyces punctatus SPPG_04498 N 0.720
e_gw1.12.287.1 Serpula lacrymans e_gw1.12.287.1 N 0.720
e_gw1.2.756.1 Heterobasidion annosum e_gw1.2.756.1 N 0.720
gw1.1.2472.1 Pleurotus ostreatus gw1.1.2472.1 N 0.720
estExt_Genewise1.C_5820041 Capitella teleta estExt_Genewise1.C_5820041 N 0.720
e_gw1.2.2126.1 Schizophyllum commune e_gw1.2.2126.1 N 0.720
TERG_01665 Trichophyton rubrum TERG_01665 N 0.700
TESG_04215 Trichophyton tonsurans TESG_04215 N 0.700
TRV_03730 Trichophyton verrucosum TRV_03730 N 0.700
TEQG_07954 Trichophyton equinum TEQG_07954 N 0.700
Chlre2_kg.scaffold_20000177 Chlamydomonas reinhardtii Chlre2_kg.scaffold_20000177 N 0.700
SJAG_03872 Schizosaccharomyces japonicus SJAG_03872 N 0.700
MGYG_04767 Microsporum gypseum MGYG_04767 N 0.700
UM03495 Ustilago maydis UM03495 N 0.700
e_gw1.7.528.1 Ostreococcus RCC809 e_gw1.7.528.1 N 0.700
An18g06710 Aspergillus niger CADANGAG00014311 N 0.700
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.700
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.700
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.700
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.700
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.700
pno1 Dictyostelium discoideum DDB_G0287557 N 0.700
ENSCING00000009577 Ciona intestinalis ENSCING00000009577 N 0.700
ENSCSAVG00000001303 Ciona savignyi ENSCSAVG00000001303 N 0.700
MCYG_07269 Microsporum canis MCYG_07269 N 0.700
HCAG_04100 Histoplasma capsulatum HCAG_04100 N 0.700
fgenesh1_pm.00129_#_16 Aspergillus carbonarius fgenesh1_pm.00129_#_16 N 0.700
fgeneshCV_pg.C_scaffold_11000142 Chlorella vulgaris fgeneshCV_pg.C_scaffold_11000142 N 0.700
Genemark1.5719_g Coccomyxa C 169 Genemark1.5719_g N 0.700
estExt_fgenesh2_kg.C_20130 Agaricus bisporus estExt_fgenesh2_kg.C_20130 N 0.700
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.700
GID1.0042265 Dictyostelium purpureum GID1.0042265 N 0.700
fgenesh2_pg.scaffold_196000015 Branchiostoma floridae fgenesh2_pg.scaffold_196000015 N 0.700
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 0.700
e_gwh1.2.512.1 Laccaria bicolor e_gwh1.2.512.1 N 0.700
e_gwEuk.7.409.1 Ostreococcus lucimarinus e_gwEuk.7.409.1 N 0.700
ARB_00984 Arthroderma benhamiae ARB_00984 N 0.700
CIMG_07268 Coccidioides immitis CIMG_07268 N 0.700
CPSG_08784 Coccidioides posadasii CPSG_08784 N 0.700
YALI0E01122g Yarrowia lipolytica YALI0E01122g N 0.700
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.700
e_gw1.8.261.1 Sporobolomyces roseus e_gw1.8.261.1 N 0.700
Pc14g01220 Penicillium chrysogenum Pc14g01220 N 0.700
PDK_20s1552091g001 Phoenix dactylifera PDK_20s1552091g001 N 0.700
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.700