CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GD11672
(
Drosophila simulans
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
FBgn0183412
T19965_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0210074
KH
13
94
AVKVAVPVRDHPKLLGPKGNSMKRLQEDTMCKMAVLGRGSMRDRRKEEELRGSGDSRYAHLFEDLHVEISTFAAPAEAHARI
Links
Other
KH
family RBPs
Other
Drosophila simulans
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GJ19910
Drosophila virilis
FBgn0207052
N
0.909
GK17902
Drosophila willistoni
FBgn0219901
N
0.909
GH21368
Drosophila grimshawi
FBgn0128830
N
0.909
CG10384
Drosophila melanogaster
FBgn0034731
N
0.886
GM15914
Drosophila sechellia
FBgn0170830
N
0.875
GE13991
Drosophila yakuba
FBgn0231623
N
0.875
GG21049
Drosophila erecta
FBgn0113232
N
0.875
GI20563
Drosophila mojavensis
FBgn0143299
N
0.864
GF11894
Drosophila ananassae
FBgn0088934
N
0.852
GA10291-RA
Drosophila pseudoobscura
FBgn0070349
N
0.841
AAEL009694
Aedes aegypti
AAEL009694
N
0.795
nasonia_NCBI_hmm272534
Nasonia vitripennis
nasonia_NCBI_hmm272534
N
0.727
BGIBMGA014155
Bombyx mori
BGIBMGA014155
N
0.716
DGIL_AUG5s14032g4t1
Acyrtosiphon pisum
DGIL_AUG5s14032g4t1
N
0.705