XM_002894480.1 (Arabidopsis lyrata)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh1_pg.C_scaffold_1004221 T20060_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1004221 KH 124 177

Links

Other KH family RBPs
Other Arabidopsis lyrata RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882767.1 Arabidopsis lyrata scaffold_301521.1 N 0.852
AT3G13230 Arabidopsis thaliana AT3G13230-TAIR-G N 0.852
ppa009897m Prunus persica ppa009897m N 0.815
MDP0000754021 Malus x domestica MDP0000754021 N 0.815
MDP0000136407 Malus x domestica MDP0000136407 N 0.815
PK08146.1 Cannabis sativa PK08146.1 N 0.815
B9GHH7_POPTR Populus trichocarpa POPTR_0001s47320 N 0.815
ppa011086m Prunus persica ppa011086m N 0.815
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 0.815
MDP0000120063 Malus x domestica MDP0000120063 N 0.815
MDP0000265633 Malus x domestica MDP0000265633 N 0.815
28525.m000262 Ricinus communis 28525.m000262 N 0.815
LOC_Os01g57910 Oryza sativa LOC_Os01g57910 N 0.796
GRMZM2G085005 Zea mays GRMZM2G085005 N 0.796
GRMZM2G139198 Zea mays GRMZM2G139198 N 0.796
mgf006621m Mimulus guttatus mgf006621m N 0.796
BRADI2G52180 Brachypodium distachyon BRADI2G52180 N 0.796
SB03G036840 Sorghum bicolor Sb03g036840 N 0.796
LOC_Os03g02420 Oryza sativa LOC_Os03g02420 N 0.796
cassava30594.valid.m1 Manihot esculenta cassava30594.valid.m1 N 0.796
PDK_20s1554761g001 Phoenix dactylifera PDK_20s1554761g001 N 0.796
Glyma08g44800.1 Glycine max Glyma08g44800.1 N 0.796
BGIOSIBCE009391 Oryza indica BGIOSIBCE009391 N 0.796
PDK_20s1552091g001 Phoenix dactylifera PDK_20s1552091g001 N 0.778
Glyma18g08100.1 Glycine max Glyma18g08100.1 N 0.778
Cucsa.041830 Cucumis sativus Cucsa.041830 N 0.778
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.778
Cucsa.201760 Cucumis sativus Cucsa.201760 N 0.778
Glyma18g08080.1 Glycine max Glyma18g08080.1 N 0.778
Medtr3g080390 Medicago truncatula Medtr3g080390 N 0.759
LjSGA_017760.2 Lotus japonicus LjSGA_017760.2 N 0.759
mgf019585m Mimulus guttatus mgf019585m N 0.741
e_gw1.226.39.1 Physcomitrella patens e_gw1.226.39.1 N 0.741
fgenesh1_kg.C_scaffold_5000048 Selaginella moellendorfii fgenesh1_kg.C_scaffold_5000048 N 0.741
Medtr5g095530 Medicago truncatula Medtr5g095530 N 0.704