B9GHH7_POPTR (Populus trichocarpa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 POPTR_0001s47320 T20192_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s47320.1 KH 209 258

Links

Other KH family RBPs
Other Populus trichocarpa RBPs

205 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 1.000
28525.m000262 Ricinus communis 28525.m000262 N 1.000
MDP0000120063 Malus x domestica MDP0000120063 N 0.980
ppa009897m Prunus persica ppa009897m N 0.980
ppa011086m Prunus persica ppa011086m N 0.980
cassava30594.valid.m1 Manihot esculenta cassava30594.valid.m1 N 0.980
MDP0000136407 Malus x domestica MDP0000136407 N 0.980
MDP0000265633 Malus x domestica MDP0000265633 N 0.980
PK08146.1 Cannabis sativa PK08146.1 N 0.980
MDP0000754021 Malus x domestica MDP0000754021 N 0.980
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.960
Glyma18g08100.1 Glycine max Glyma18g08100.1 N 0.940
Cucsa.041830 Cucumis sativus Cucsa.041830 N 0.940
Glyma18g08080.1 Glycine max Glyma18g08080.1 N 0.940
Cucsa.201760 Cucumis sativus Cucsa.201760 N 0.940
Glyma08g44800.1 Glycine max Glyma08g44800.1 N 0.940
Medtr3g080390 Medicago truncatula Medtr3g080390 N 0.920
GRMZM2G139198 Zea mays GRMZM2G139198 N 0.920
BRADI2G52180 Brachypodium distachyon BRADI2G52180 N 0.920
BGIOSIBCE009391 Oryza indica BGIOSIBCE009391 N 0.920
SB03G036840 Sorghum bicolor Sb03g036840 N 0.920
GRMZM2G085005 Zea mays GRMZM2G085005 N 0.920
mgf006621m Mimulus guttatus mgf006621m N 0.920
LOC_Os03g02420 Oryza sativa LOC_Os03g02420 N 0.920
LOC_Os01g57910 Oryza sativa LOC_Os01g57910 N 0.920
LjSGA_017760.2 Lotus japonicus LjSGA_017760.2 N 0.920
PDK_20s1554761g001 Phoenix dactylifera PDK_20s1554761g001 N 0.920
XM_002882767.1 Arabidopsis lyrata scaffold_301521.1 N 0.900
AT3G13230 Arabidopsis thaliana AT3G13230-TAIR-G N 0.900
PDK_20s1552091g001 Phoenix dactylifera PDK_20s1552091g001 N 0.900
mgf019585m Mimulus guttatus mgf019585m N 0.860
e_gw1.226.39.1 Physcomitrella patens e_gw1.226.39.1 N 0.860
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.820
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.820
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 0.820
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.820
fgenesh1_kg.C_scaffold_5000048 Selaginella moellendorfii fgenesh1_kg.C_scaffold_5000048 N 0.820
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.820
pno1 Danio rerio ENSDARG00000008502 N 0.820
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.820
Medtr5g095530 Medicago truncatula Medtr5g095530 N 0.820
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.820
Chlre2_kg.scaffold_20000177 Chlamydomonas reinhardtii Chlre2_kg.scaffold_20000177 N 0.820
XM_002894480.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004221 N 0.815
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.800
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.800
DGIL_AUG5s4501g8t1 Acyrtosiphon pisum DGIL_AUG5s4501g8t1 N 0.800
0700010277 Ostreococcus tauri 0700010277 N 0.800
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.800
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.800
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.800
fgenesh2_pg.scaffold_196000015 Branchiostoma floridae fgenesh2_pg.scaffold_196000015 N 0.800
GSVIVG00008219001 Vitis vinifera GSVIVG00008219001 N 0.800
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.800
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.800
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.800
AAH42279 Xenopus laevis AAH42279 N 0.780
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.780
AMAG_14219 Allomyces macrogynus AMAG_14219 N 0.780
e_gw1.7.528.1 Ostreococcus RCC809 e_gw1.7.528.1 N 0.780
e_gw1.4.614.1 Micromonas pusilla e_gw1.4.614.1 N 0.780
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.780
e_gww2.1.865.1 Phanerochaete chrysosporium e_gww2.1.865.1 N 0.780
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.780
AMAG_12889 Allomyces macrogynus AMAG_12889 N 0.780
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.780
e_gwEuk.7.409.1 Ostreococcus lucimarinus e_gwEuk.7.409.1 N 0.780
Q8AVH4 Xenopus laevis Q8AVH4 N 0.780
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.780
AAQ24169 Xenopus laevis AAQ24169 N 0.780
fgenesh3_pm.54__15 Postia placenta fgenesh3_pm.54__15 N 0.780
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.760
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.760
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.760
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.760
PNO1 Sus scrofa ENSSSCG00000008352 N 0.760
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.760
PNO1 Procavia capensis ENSPCAG00000016146 N 0.760
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.760
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.760
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.760
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.760
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.760
PNO1 Canis familiaris ENSCAFG00000003256 N 0.760
PNO1 Homo sapiens ENSG00000115946 N 0.760
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.760
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.760
LOC100061904 Equus caballus ENSECAG00000011263 N 0.760
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.760
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.760
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.760
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.760
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.760
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.760
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.760
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.760
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.760
PNO1 Microcebus murinus ENSMICG00000010897 N 0.760
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.760
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.760
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.760
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.760
gw1.1.2472.1 Pleurotus ostreatus gw1.1.2472.1 N 0.760
e_gw1.2.2126.1 Schizophyllum commune e_gw1.2.2126.1 N 0.760
estExt_fgenesh2_kg.C_20130 Agaricus bisporus estExt_fgenesh2_kg.C_20130 N 0.760
e_gwh1.2.512.1 Laccaria bicolor e_gwh1.2.512.1 N 0.760
estExt_Genewise1Plus.C_250095 Phycomyces blakesleeanus estExt_Genewise1Plus.C_250095 N 0.760
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.760
e_gw1.12.287.1 Serpula lacrymans e_gw1.12.287.1 N 0.760
GK20148 Drosophila willistoni FBgn0222145 N 0.745
estExt_Genewise1Plus.C_10659 Myceliophthora thermophila estExt_Genewise1Plus.C_10659 N 0.740
fgenesh1_pm.C_scaffold_5000030 Phytophthora ramorum fgenesh1_pm.C_scaffold_5000030 N 0.740
s_468317 Phytophthora sojae s_468317 N 0.740
BGIBMGA014064 Bombyx mori BGIBMGA014064 N 0.740
20872_YOR145C Saccharomyces paradoxus 20872_YOR145C N 0.740
Kwal_18864 Kluyveromyces waltii Kwal_18864 N 0.740
Scas_Contig632.19 Saccharomyces castellii Scas_Contig632.19 N 0.740
estExt_Genewise1.C_5820041 Capitella teleta estExt_Genewise1.C_5820041 N 0.740
fgeneshTA2_pg.C_scaffold_14000176 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_14000176 N 0.740
XM_001110046.1 Macaca mulatta ENSMMUG00000003556 N 0.740
PF14_0661 Plasmodium falciparum PF14_0661 N 0.740
PKH_123590 Plasmodium knowlesi PKH_123590 N 0.740
PCHAS_133710 Plasmodium chabaudi PCHAS_133710 N 0.740
PBANKA_133250 Plasmodium berghei PBANKA_133250 N 0.740
PNO1 Saccharomyces cerevisiae YOR145C N 0.740
PVX_117000 Plasmodium vivax PVX_117000 N 0.740
PY03646 Plasmodium yoelii PY03646 N 0.740
SPPG_04498 Spizellomyces punctatus SPPG_04498 N 0.740
Pno1 Mus musculus ENSMUSG00000020116 N 0.740
e_gw1.13.100.1 Volvox carteri e_gw1.13.100.1 N 0.740
PHUM356890 Pediculus humanus PHUM356890 N 0.740
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.740
Skud_Contig1833.8 Saccharomyces kudriavzevii Skud_Contig1833.8 N 0.740
Genemark1.5719_g Coccomyxa C 169 Genemark1.5719_g N 0.740
PITG_01680 Phytophthora infestans PITG_01680 N 0.740
estExt_fgenesh1_pg.C_190237 Phytophthora capsici estExt_fgenesh1_pg.C_190237 N 0.740
e_gw1.2.756.1 Heterobasidion annosum e_gw1.2.756.1 N 0.740
e_gw1.15.315.1 Tremella mesenterica e_gw1.15.315.1 N 0.740
GSPATP00020703001 Paramecium tetraurelia GSPATP00020703001 N 0.740
fgeneshCV_pg.C_scaffold_11000142 Chlorella vulgaris fgeneshCV_pg.C_scaffold_11000142 N 0.740
KLLA0C06446g Kluyveromyces lactis KLLA0C06446g N 0.740
GSPATP00021981001 Paramecium tetraurelia GSPATP00021981001 N 0.740
KLTH0G02574g Kluyveromyces thermotolerans KLTH0G02574g N 0.740
GA11169-RA Drosophila pseudoobscura FBgn0071224 N 0.725
GM23025 Drosophila sechellia FBgn0177893 N 0.725
GE17874 Drosophila yakuba FBgn0068478 N 0.725
GF20246 Drosophila ananassae FBgn0097253 N 0.725
GG19285 Drosophila erecta FBgn0111489 N 0.725
20359_YOR145C Saccharomyces mikatae 20359_YOR145C N 0.725
GH12628 Drosophila grimshawi FBgn0120107 N 0.725
l(1)G0004 Drosophila melanogaster FBgn0027334 N 0.725
GJ15820 Drosophila virilis FBgn0203007 N 0.725
GD17488 Drosophila simulans FBgn0189040 N 0.725
CLUG_01545 Candida lusitaniae CLUG_01545 N 0.720
estExt_fgenesh1_pg.C_110137 Monosiga brevicollis estExt_fgenesh1_pg.C_110137 N 0.720
rbp28 Schizosaccharomyces pombe SPAC2C4.11c N 0.720
SAKL0G03740g Lachancea kluyveri SAKL0G03740g N 0.720
ZYRO0D11440g Zygosaccharomyces rouxii ZYRO0D11440g N 0.720
27316 Aureococcus anophagefferens 27316 N 0.720
estExt_Genewise1.C_10689 Thielavia terrestris estExt_Genewise1.C_10689 N 0.720
e_gw1.18.222.1 Chlorella NC64A e_gw1.18.222.1 N 0.720
e_gw1.8.261.1 Sporobolomyces roseus e_gw1.8.261.1 N 0.720
DEHA0G05258g Debaryomyces hansenii DEHA0G05258g N 0.720
23888_YOR145C Saccharomyces bayanus 23888_YOR145C N 0.720
PTSG_04415 Salpingoeca rosetta PTSG_04415 N 0.720
orf19.7618 Candida albicans orf19.7618 N 0.720
3712.m00082 Tetrahymena thermophila 3712.m00082 N 0.720
A7THL8_VANPO Vanderwaltozyma polyspora A7THL8_VANPO N 0.720
Cd36_35296 Candida dubliniensis Cd36_35296 N 0.720
EDP42908.1 Malassezia globosa EDP42908.1 N 0.720
UM03495 Ustilago maydis UM03495 N 0.720
GP3.070330 Batrachochytrium dendrobatidis GP3.070330 N 0.720
LELG_05249 Lodderomyces elongisporus LELG_05249 N 0.720
CTRG_05813 Candida tropicalis CTRG_05813 N 0.720
estExt_genewise1_human.C_chr_1.20929 Pichia stipitis estExt_genewise1_human.C_chr_1.20929 N 0.720
CPAG_01545 Candida parapsilosis CPAG_01545 N 0.720
CAGL0K09460g Candida glabrata CAGL0K09460g N 0.720
fgenesh1_pg.C_scaffold_107000027 Daphnia pulex fgenesh1_pg.C_scaffold_107000027 N 0.720
ENSCING00000009577 Ciona intestinalis ENSCING00000009577 N 0.720
ENSCJAG00000022611 Callithrix jacchus ENSCJAG00000022611 N 0.720
ENSCSAVG00000001303 Ciona savignyi ENSCSAVG00000001303 N 0.720
GI11042 Drosophila mojavensis FBgn0133805 N 0.706
CMU_025600 Cryptosporidium muris CMU_025600 N 0.706
PNO1_IXOSC Ixodes scapularis ISCW023560 N 0.700
PNO1 Ashbya gossypii PNO1 N 0.700
estExt_Genewise1Plus.C_91132 Trichoderma virens estExt_Genewise1Plus.C_91132 N 0.700
estExt_Genewise1Plus.C_chr_70397 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_70397 N 0.700
fgenesh1_pm.C_scaffold_14000035 Trichoderma atroviride fgenesh1_pm.C_scaffold_14000035 N 0.700
fgenesh_newKGs_pm.139__21 Emiliania huxleyi fgenesh_newKGs_pm.139__21 N 0.700
estExt_fgenesh5_pg.C_40050 Trichoderma reesei estExt_fgenesh5_pg.C_40050 N 0.700
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036 Nectria haematococca estExt_fgenesh1_pg.C_sca_1_chr1_3_00036 N 0.700
TvY486_0905560 Trypanosoma vivax TvY486_0905560 N 0.700
SNAPOd2T00014997001 Oikopleura dioica SNAPOd2T00014997001 N 0.700
SNAPOd2T00029081001 Oikopleura dioica SNAPOd2T00029081001 N 0.700
GID1.0042265 Dictyostelium purpureum GID1.0042265 N 0.700
EFA79428.1 Polysphondylium pallidum EFA79428.1 N 0.700
PGUG_02960 Candida guilliermondii PGUG_02960 N 0.700
PTTG_01898 Puccinia triticina PTTG_01898 N 0.700
SJAG_03872 Schizosaccharomyces japonicus SJAG_03872 N 0.700
FVEG_01480 Fusarium verticillioides FVEG_01480 N 0.700
FOXG_00036 Fusarium oxysporum FOXG_00036 N 0.700
GSTUMT00003923001 Tuber melanosporum GSTUMT00003923001 N 0.700
CNBG_1323 Cryptococcus neoformans CNBG_1323 N 0.700
FGSG_01345 Fusarium graminearum FGSG_01345 N 0.700
pno1 Dictyostelium discoideum DDB_G0287557 N 0.700