Cucsa.201760 (Cucumis sativus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 Cucsa.201760 T20712_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.201760.1 KH 148 197

Links

Other KH family RBPs
Other Cucumis sativus RBPs

189 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.041830 Cucumis sativus Cucsa.041830 N 1.000
MDP0000120063 Malus x domestica MDP0000120063 N 0.960
PK08146.1 Cannabis sativa PK08146.1 N 0.960
Glyma18g08080.1 Glycine max Glyma18g08080.1 N 0.960
MDP0000136407 Malus x domestica MDP0000136407 N 0.960
Glyma18g08100.1 Glycine max Glyma18g08100.1 N 0.960
cassava30594.valid.m1 Manihot esculenta cassava30594.valid.m1 N 0.960
ppa009897m Prunus persica ppa009897m N 0.960
MDP0000265633 Malus x domestica MDP0000265633 N 0.960
ppa011086m Prunus persica ppa011086m N 0.960
MDP0000754021 Malus x domestica MDP0000754021 N 0.960
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 0.940
Glyma08g44800.1 Glycine max Glyma08g44800.1 N 0.940
Medtr3g080390 Medicago truncatula Medtr3g080390 N 0.940
B9GHH7_POPTR Populus trichocarpa POPTR_0001s47320 N 0.940
LjSGA_017760.2 Lotus japonicus LjSGA_017760.2 N 0.940
28525.m000262 Ricinus communis 28525.m000262 N 0.940
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.940
mgf006621m Mimulus guttatus mgf006621m N 0.900
PDK_20s1554761g001 Phoenix dactylifera PDK_20s1554761g001 N 0.880
GRMZM2G085005 Zea mays GRMZM2G085005 N 0.880
LOC_Os01g57910 Oryza sativa LOC_Os01g57910 N 0.880
SB03G036840 Sorghum bicolor Sb03g036840 N 0.880
LOC_Os03g02420 Oryza sativa LOC_Os03g02420 N 0.880
GRMZM2G139198 Zea mays GRMZM2G139198 N 0.880
BGIOSIBCE009391 Oryza indica BGIOSIBCE009391 N 0.880
BRADI2G52180 Brachypodium distachyon BRADI2G52180 N 0.880
XM_002882767.1 Arabidopsis lyrata scaffold_301521.1 N 0.860
mgf019585m Mimulus guttatus mgf019585m N 0.860
AT3G13230 Arabidopsis thaliana AT3G13230-TAIR-G N 0.860
PDK_20s1552091g001 Phoenix dactylifera PDK_20s1552091g001 N 0.860
Medtr5g095530 Medicago truncatula Medtr5g095530 N 0.840
fgenesh1_kg.C_scaffold_5000048 Selaginella moellendorfii fgenesh1_kg.C_scaffold_5000048 N 0.840
e_gw1.226.39.1 Physcomitrella patens e_gw1.226.39.1 N 0.840
GSVIVG00008219001 Vitis vinifera GSVIVG00008219001 N 0.800
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.800
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.800
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.800
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.800
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.800
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.800
e_gw1.4.614.1 Micromonas pusilla e_gw1.4.614.1 N 0.780
fgenesh3_pm.54__15 Postia placenta fgenesh3_pm.54__15 N 0.780
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.780
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.780
Chlre2_kg.scaffold_20000177 Chlamydomonas reinhardtii Chlre2_kg.scaffold_20000177 N 0.780
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 0.780
e_gww2.1.865.1 Phanerochaete chrysosporium e_gww2.1.865.1 N 0.780
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.780
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.780
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.780
pno1 Danio rerio ENSDARG00000008502 N 0.780
XM_002894480.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004221 N 0.778
estExt_fgenesh1_pg.C_190237 Phytophthora capsici estExt_fgenesh1_pg.C_190237 N 0.760
e_gw1.12.287.1 Serpula lacrymans e_gw1.12.287.1 N 0.760
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.760
gw1.1.2472.1 Pleurotus ostreatus gw1.1.2472.1 N 0.760
0700010277 Ostreococcus tauri 0700010277 N 0.760
UM03495 Ustilago maydis UM03495 N 0.760
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.760
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.760
fgenesh2_pg.scaffold_196000015 Branchiostoma floridae fgenesh2_pg.scaffold_196000015 N 0.760
fgenesh1_pm.C_scaffold_5000030 Phytophthora ramorum fgenesh1_pm.C_scaffold_5000030 N 0.760
s_468317 Phytophthora sojae s_468317 N 0.760
estExt_Genewise1Plus.C_250095 Phycomyces blakesleeanus estExt_Genewise1Plus.C_250095 N 0.760
PITG_01680 Phytophthora infestans PITG_01680 N 0.760
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.760
e_gw1.2.2126.1 Schizophyllum commune e_gw1.2.2126.1 N 0.760
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.760
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.760
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.740
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.740
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.740
PTTG_01898 Puccinia triticina PTTG_01898 N 0.740
SPPG_04498 Spizellomyces punctatus SPPG_04498 N 0.740
DGIL_AUG5s4501g8t1 Acyrtosiphon pisum DGIL_AUG5s4501g8t1 N 0.740
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.740
AMAG_14219 Allomyces macrogynus AMAG_14219 N 0.740
AAQ24169 Xenopus laevis AAQ24169 N 0.740
Q8AVH4 Xenopus laevis Q8AVH4 N 0.740
AMAG_12889 Allomyces macrogynus AMAG_12889 N 0.740
AAH42279 Xenopus laevis AAH42279 N 0.740
GSPATP00021981001 Paramecium tetraurelia GSPATP00021981001 N 0.740
PF14_0661 Plasmodium falciparum PF14_0661 N 0.740
PCHAS_133710 Plasmodium chabaudi PCHAS_133710 N 0.740
estExt_Genewise1Plus.C_10659 Myceliophthora thermophila estExt_Genewise1Plus.C_10659 N 0.740
PKH_123590 Plasmodium knowlesi PKH_123590 N 0.740
PVX_117000 Plasmodium vivax PVX_117000 N 0.740
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.740
PHUM356890 Pediculus humanus PHUM356890 N 0.740
PBANKA_133250 Plasmodium berghei PBANKA_133250 N 0.740
PNO1 Saccharomyces cerevisiae YOR145C N 0.740
Scas_Contig632.19 Saccharomyces castellii Scas_Contig632.19 N 0.740
BGIBMGA014064 Bombyx mori BGIBMGA014064 N 0.740
20872_YOR145C Saccharomyces paradoxus 20872_YOR145C N 0.740
Kwal_18864 Kluyveromyces waltii Kwal_18864 N 0.740
Skud_Contig1833.8 Saccharomyces kudriavzevii Skud_Contig1833.8 N 0.740
PY03646 Plasmodium yoelii PY03646 N 0.740
e_gwEuk.7.409.1 Ostreococcus lucimarinus e_gwEuk.7.409.1 N 0.740
e_gw1.7.528.1 Ostreococcus RCC809 e_gw1.7.528.1 N 0.740
KLLA0C06446g Kluyveromyces lactis KLLA0C06446g N 0.740
KLTH0G02574g Kluyveromyces thermotolerans KLTH0G02574g N 0.740
Genemark1.5719_g Coccomyxa C 169 Genemark1.5719_g N 0.740
GSPATP00020703001 Paramecium tetraurelia GSPATP00020703001 N 0.740
fgeneshCV_pg.C_scaffold_11000142 Chlorella vulgaris fgeneshCV_pg.C_scaffold_11000142 N 0.740
e_gw1.2.756.1 Heterobasidion annosum e_gw1.2.756.1 N 0.740
20359_YOR145C Saccharomyces mikatae 20359_YOR145C N 0.725
rbp28 Schizosaccharomyces pombe SPAC2C4.11c N 0.720
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.720
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.720
PNO1 Homo sapiens ENSG00000115946 N 0.720
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.720
27316 Aureococcus anophagefferens 27316 N 0.720
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.720
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.720
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.720
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.720
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.720
PNO1 Sus scrofa ENSSSCG00000008352 N 0.720
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.720
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.720
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.720
PNO1 Procavia capensis ENSPCAG00000016146 N 0.720
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.720
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.720
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.720
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.720
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.720
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.720
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.720
PNO1 Microcebus murinus ENSMICG00000010897 N 0.720
CLUG_01545 Candida lusitaniae CLUG_01545 N 0.720
SAKL0G03740g Lachancea kluyveri SAKL0G03740g N 0.720
LOC100061904 Equus caballus ENSECAG00000011263 N 0.720
estExt_fgenesh2_kg.C_20130 Agaricus bisporus estExt_fgenesh2_kg.C_20130 N 0.720
ZYRO0D11440g Zygosaccharomyces rouxii ZYRO0D11440g N 0.720
CPAG_01545 Candida parapsilosis CPAG_01545 N 0.720
estExt_genewise1_human.C_chr_1.20929 Pichia stipitis estExt_genewise1_human.C_chr_1.20929 N 0.720
CTRG_05813 Candida tropicalis CTRG_05813 N 0.720
e_gw1.15.315.1 Tremella mesenterica e_gw1.15.315.1 N 0.720
Cd36_35296 Candida dubliniensis Cd36_35296 N 0.720
23888_YOR145C Saccharomyces bayanus 23888_YOR145C N 0.720
GP3.070330 Batrachochytrium dendrobatidis GP3.070330 N 0.720
3712.m00082 Tetrahymena thermophila 3712.m00082 N 0.720
A7THL8_VANPO Vanderwaltozyma polyspora A7THL8_VANPO N 0.720
CAGL0K09460g Candida glabrata CAGL0K09460g N 0.720
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.720
estExt_Genewise1.C_5820041 Capitella teleta estExt_Genewise1.C_5820041 N 0.720
DEHA0G05258g Debaryomyces hansenii DEHA0G05258g N 0.720
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.720
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.720
SPOG_00402 Schizosaccharomyces cryophilus SPOG_00402 N 0.720
PNO1 Canis familiaris ENSCAFG00000003256 N 0.720
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.720
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.720
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.720
LELG_05249 Lodderomyces elongisporus LELG_05249 N 0.720
e_gwh1.2.512.1 Laccaria bicolor e_gwh1.2.512.1 N 0.720
estExt_Genewise1.C_260084 Melampsora laricis populina estExt_Genewise1.C_260084 N 0.720
estExt_Genewise1.C_10689 Thielavia terrestris estExt_Genewise1.C_10689 N 0.720
orf19.7618 Candida albicans orf19.7618 N 0.720
GK20148 Drosophila willistoni FBgn0222145 N 0.706
estExt_Genewise1Plus.C_91132 Trichoderma virens estExt_Genewise1Plus.C_91132 N 0.700
fgenesh_newKGs_pm.139__21 Emiliania huxleyi fgenesh_newKGs_pm.139__21 N 0.700
fgenesh1_pg.C_scaffold_107000027 Daphnia pulex fgenesh1_pg.C_scaffold_107000027 N 0.700
fgeneshTA2_pg.C_scaffold_14000176 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_14000176 N 0.700
estExt_fgenesh5_pg.C_40050 Trichoderma reesei estExt_fgenesh5_pg.C_40050 N 0.700
fgenesh1_pm.C_scaffold_14000035 Trichoderma atroviride fgenesh1_pm.C_scaffold_14000035 N 0.700
EHI_065870 Entamoeba histolytica EHI_065870 N 0.700
e_gw1.8.261.1 Sporobolomyces roseus e_gw1.8.261.1 N 0.700
e_gw1.18.222.1 Chlorella NC64A e_gw1.18.222.1 N 0.700
EDI_198550 Entamoeba dispar EDI_198550 N 0.700
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036 Nectria haematococca estExt_fgenesh1_pg.C_sca_1_chr1_3_00036 N 0.700
GSTUMT00003923001 Tuber melanosporum GSTUMT00003923001 N 0.700
PTRG_02803 Pyrenophora tritici repentis PTRG_02803 N 0.700
Pno1 Mus musculus ENSMUSG00000020116 N 0.700
PTSG_04415 Salpingoeca rosetta PTSG_04415 N 0.700
SJAG_03872 Schizosaccharomyces japonicus SJAG_03872 N 0.700
SOCG_04140 Schizosaccharomyces octosporus SOCG_04140 N 0.700
XM_001110046.1 Macaca mulatta ENSMMUG00000003556 N 0.700
PGUG_02960 Candida guilliermondii PGUG_02960 N 0.700
FVEG_01480 Fusarium verticillioides FVEG_01480 N 0.700
PNO1 Ashbya gossypii PNO1 N 0.700
EDP42908.1 Malassezia globosa EDP42908.1 N 0.700
YALI0E01122g Yarrowia lipolytica YALI0E01122g N 0.700
e_gw1.13.100.1 Volvox carteri e_gw1.13.100.1 N 0.700
FOXG_00036 Fusarium oxysporum FOXG_00036 N 0.700
FGSG_01345 Fusarium graminearum FGSG_01345 N 0.700
EFA79428.1 Polysphondylium pallidum EFA79428.1 N 0.700