XM_002882767.1 (Arabidopsis lyrata)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 scaffold_301521.1 T20289_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_301521.1 KH 141 190

Links

Other KH family RBPs
Other Arabidopsis lyrata RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT3G13230 Arabidopsis thaliana AT3G13230-TAIR-G N 0.980
B9GHH7_POPTR Populus trichocarpa POPTR_0001s47320 N 0.900
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 0.900
MDP0000265633 Malus x domestica MDP0000265633 N 0.900
MDP0000120063 Malus x domestica MDP0000120063 N 0.900
MDP0000136407 Malus x domestica MDP0000136407 N 0.900
PK08146.1 Cannabis sativa PK08146.1 N 0.900
MDP0000754021 Malus x domestica MDP0000754021 N 0.900
ppa011086m Prunus persica ppa011086m N 0.900
28525.m000262 Ricinus communis 28525.m000262 N 0.900
ppa009897m Prunus persica ppa009897m N 0.900
Glyma08g44800.1 Glycine max Glyma08g44800.1 N 0.880
BGIOSIBCE009391 Oryza indica BGIOSIBCE009391 N 0.880
GRMZM2G139198 Zea mays GRMZM2G139198 N 0.880
GRMZM2G085005 Zea mays GRMZM2G085005 N 0.880
BRADI2G52180 Brachypodium distachyon BRADI2G52180 N 0.880
LOC_Os03g02420 Oryza sativa LOC_Os03g02420 N 0.880
cassava30594.valid.m1 Manihot esculenta cassava30594.valid.m1 N 0.880
PDK_20s1554761g001 Phoenix dactylifera PDK_20s1554761g001 N 0.880
SB03G036840 Sorghum bicolor Sb03g036840 N 0.880
mgf006621m Mimulus guttatus mgf006621m N 0.880
LOC_Os01g57910 Oryza sativa LOC_Os01g57910 N 0.880
PDK_20s1552091g001 Phoenix dactylifera PDK_20s1552091g001 N 0.860
Glyma18g08100.1 Glycine max Glyma18g08100.1 N 0.860
e_gw1.226.39.1 Physcomitrella patens e_gw1.226.39.1 N 0.860
fgenesh1_kg.C_scaffold_5000048 Selaginella moellendorfii fgenesh1_kg.C_scaffold_5000048 N 0.860
Cucsa.201760 Cucumis sativus Cucsa.201760 N 0.860
Cucsa.041830 Cucumis sativus Cucsa.041830 N 0.860
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.860
Glyma18g08080.1 Glycine max Glyma18g08080.1 N 0.860
XM_002894480.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004221 N 0.852
LjSGA_017760.2 Lotus japonicus LjSGA_017760.2 N 0.840
mgf019585m Mimulus guttatus mgf019585m N 0.840
Medtr3g080390 Medicago truncatula Medtr3g080390 N 0.840
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.760
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.760
Chlre2_kg.scaffold_20000177 Chlamydomonas reinhardtii Chlre2_kg.scaffold_20000177 N 0.760
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 0.760
Medtr5g095530 Medicago truncatula Medtr5g095530 N 0.760
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.760
pno1 Danio rerio ENSDARG00000008502 N 0.760
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.760
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.760
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.760
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.740
DGIL_AUG5s4501g8t1 Acyrtosiphon pisum DGIL_AUG5s4501g8t1 N 0.740
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.740
GSVIVG00008219001 Vitis vinifera GSVIVG00008219001 N 0.740
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.740
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.740
PTSG_04415 Salpingoeca rosetta PTSG_04415 N 0.740
estExt_Genewise1.C_10689 Thielavia terrestris estExt_Genewise1.C_10689 N 0.740
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.740
fgenesh2_pg.scaffold_196000015 Branchiostoma floridae fgenesh2_pg.scaffold_196000015 N 0.740
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.740
estExt_Genewise1Plus.C_10659 Myceliophthora thermophila estExt_Genewise1Plus.C_10659 N 0.720
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.720
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.720
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.720
0700010277 Ostreococcus tauri 0700010277 N 0.720
GSPATP00020703001 Paramecium tetraurelia GSPATP00020703001 N 0.720
Q8AVH4 Xenopus laevis Q8AVH4 N 0.720
AAH42279 Xenopus laevis AAH42279 N 0.720
GSPATP00021981001 Paramecium tetraurelia GSPATP00021981001 N 0.720
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.720
AAQ24169 Xenopus laevis AAQ24169 N 0.720
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.700
PNO1 Procavia capensis ENSPCAG00000016146 N 0.700
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.700
Pno1 Mus musculus ENSMUSG00000020116 N 0.700
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.700
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.700
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.700
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.700
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.700
estExt_Genewise1Plus.C_430054 Neurospora tetrasperma estExt_Genewise1Plus.C_430054 N 0.700
NCU07956 Neurospora crassa NCU07956 N 0.700
e_gwEuk.7.409.1 Ostreococcus lucimarinus e_gwEuk.7.409.1 N 0.700
e_gw1.7.528.1 Ostreococcus RCC809 e_gw1.7.528.1 N 0.700
e_gw1.4.614.1 Micromonas pusilla e_gw1.4.614.1 N 0.700
e_gw1.3.666.1 Neurospora discreta e_gw1.3.666.1 N 0.700
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.700
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.700
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.700
PNO1 Sus scrofa ENSSSCG00000008352 N 0.700
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.700
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.700
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.700
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.700
20872_YOR145C Saccharomyces paradoxus 20872_YOR145C N 0.700
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.700
Skud_Contig1833.8 Saccharomyces kudriavzevii Skud_Contig1833.8 N 0.700
Scas_Contig632.19 Saccharomyces castellii Scas_Contig632.19 N 0.700
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.700
pno1 Dictyostelium discoideum DDB_G0287557 N 0.700
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.700
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.700
KLLA0C06446g Kluyveromyces lactis KLLA0C06446g N 0.700
KLTH0G02574g Kluyveromyces thermotolerans KLTH0G02574g N 0.700
PNO1 Saccharomyces cerevisiae YOR145C N 0.700
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.700
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.700
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.700
PNO1 Canis familiaris ENSCAFG00000003256 N 0.700
Kwal_18864 Kluyveromyces waltii Kwal_18864 N 0.700
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.700
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.700
PNO1 Microcebus murinus ENSMICG00000010897 N 0.700
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.700
PNO1 Homo sapiens ENSG00000115946 N 0.700
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.700
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.700
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.700
GID1.0042265 Dictyostelium purpureum GID1.0042265 N 0.700
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.700
LOC100061904 Equus caballus ENSECAG00000011263 N 0.700
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.700