fgenesh2_pm.11_#_145 (Fragilariopsis cylindrus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh2_pm.11_#_145 T21113_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pm.11_#_145 KH 128 177

Links

Other KH family RBPs
Other Fragilariopsis cylindrus RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PHATRDRAFT_9929 Phaeodactylum tricornutum Phatr9929 N 0.880
THAPSDRAFT_35041 Thalassiosira pseudonana Thaps35041 N 0.840
27316 Aureococcus anophagefferens 27316 N 0.780
fgenesh1_pm.C_scaffold_5000030 Phytophthora ramorum fgenesh1_pm.C_scaffold_5000030 N 0.740
PITG_01680 Phytophthora infestans PITG_01680 N 0.740
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.740
s_468317 Phytophthora sojae s_468317 N 0.740
estExt_fgenesh1_pg.C_190237 Phytophthora capsici estExt_fgenesh1_pg.C_190237 N 0.740
e_gw1.2.2126.1 Schizophyllum commune e_gw1.2.2126.1 N 0.700
e_gw1.226.39.1 Physcomitrella patens e_gw1.226.39.1 N 0.700
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 0.700
SJAG_03872 Schizosaccharomyces japonicus SJAG_03872 N 0.700
Chlre2_kg.scaffold_20000177 Chlamydomonas reinhardtii Chlre2_kg.scaffold_20000177 N 0.700
EFA79428.1 Polysphondylium pallidum EFA79428.1 N 0.700
GID1.0042265 Dictyostelium purpureum GID1.0042265 N 0.700
pno1 Dictyostelium discoideum DDB_G0287557 N 0.700
GSPATP00020703001 Paramecium tetraurelia GSPATP00020703001 N 0.700
GSPATP00021981001 Paramecium tetraurelia GSPATP00021981001 N 0.700
SPPG_04498 Spizellomyces punctatus SPPG_04498 N 0.700