CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PGUG_04435
(
Candida guilliermondii
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
PGUG_04435
T25440_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGUT_04435
RRM
233
299
LNLKNLPVDTTQSELESWFTQFGGRPIAFWTIKGDNQNMGFAVFATHEEAAEALPINGRVLGDRAIE
PGUT_04435
RanBP ZF
326
355
RPGDWTCPSCGFSNFQRRTACFRCSFPATS
PGUT_04435
RanBP ZF
390
421
RAGDWKCTNDACQYHNFAKNITCLKCGGNKPS
Links
Other
RanBP ZF,RRM
family RBPs
Other
Candida guilliermondii
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPAG_02028
Candida parapsilosis
CPAG_02028
N
0.723
estExt_fgenesh1_pm.C_chr_80348
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_80348
N
0.714
Pc21g14870
Penicillium chrysogenum
Pc21g14870
N
0.707
estExt_Genewise1.C_50445
Mycosphaerella fijiensis
estExt_Genewise1.C_50445
N
0.707
ARB_00799
Arthroderma benhamiae
ARB_00799
N
0.707
fgenesh1_pm.00866_#_655
Aspergillus carbonarius
fgenesh1_pm.00866_#_655
N
0.707
CIMG_06432
Coccidioides immitis
CIMG_06432
N
0.707
MGYG_04027
Microsporum gypseum
MGYG_04027
N
0.707
MCYG_02047
Microsporum canis
MCYG_02047
N
0.707
CPSG_00638
Coccidioides posadasii
CPSG_00638
N
0.707
TEQG_06114
Trichophyton equinum
TEQG_06114
N
0.707
BDBG_01534
Blastomyces dermatitidis
BDBG_01534
N
0.707
NFIA_039950
Neosartorya fischeri
CADNFIAG00002962
N
0.707
UREG_03978
Uncinocarpus reesii
UREG_03978
N
0.707
TRV_00689
Trichophyton verrucosum
TRV_00689
N
0.707
TESG_06793
Trichophyton tonsurans
TESG_06793
N
0.707
TERG_04360
Trichophyton rubrum
TERG_04360
N
0.707
ACLA_003080
Aspergillus clavatus
CADACLAG00000382
N
0.707
AFLA_003900
Aspergillus flavus
CADAFLAG00010456
N
0.707
ANIA_08055
Aspergillus nidulans
CADANIAG00004081
N
0.707
AO090102000274
Aspergillus oryzae
CADAORAG00009617
N
0.707
An02g10780
Aspergillus niger
CADANGAG00002596
N
0.707
AFUA_5G02160
Aspergillus fumigatus
CADAFUAG00002676
N
0.707
ATEG_09171
Aspergillus terreus
CADATEAG00003372
N
0.707
CLUG_03544
Candida lusitaniae
CLUG_03544
N
0.700