CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPAG_02028
(
Candida parapsilosis
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
CPAG_02028
T25420_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPAG_02028.1
RRM
216
281
LYLSNLPSDTTQSELESWFTQYGGRPVAYWTLSGKGVSGFAVFGTHEEATESLAMNGKALNDCVIE
CPAG_02028.1
RanBP ZF
308
337
RPGDWTCPSCGFSNFQRRTHCFRCSFPASS
CPAG_02028.1
RanBP ZF
390
419
RAGDWKCETCQYHNFAKNLCCLKCGSSKPI
Links
Other
RanBP ZF,RRM
family RBPs
Other
Candida parapsilosis
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGUG_04435
Candida guilliermondii
PGUG_04435
N
0.723
estExt_Genewise1.C_50445
Mycosphaerella fijiensis
estExt_Genewise1.C_50445
N
0.716
estExt_fgenesh1_pm.C_chr_80348
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_80348
N
0.709
estExt_fgenesh1_pm.C_30636
Myceliophthora thermophila
estExt_fgenesh1_pm.C_30636
N
0.709
CLUG_03544
Candida lusitaniae
CLUG_03544
N
0.707
estExt_Genewise1.C_11720
Neurospora discreta
estExt_Genewise1.C_11720
N
0.701
estExt_fgenesh1_pg.C_10521
Neurospora tetrasperma
estExt_fgenesh1_pg.C_10521
N
0.701
VDAG_01381
Verticillium dahliae
VDAG_01381
N
0.701
NCU06684
Neurospora crassa
NCU06684
N
0.701
GLRG_04960
Colletotrichum graminicola
GLRG_04960
N
0.701