CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_50445
(
Mycosphaerella fijiensis
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
estExt_Genewise1.C_50445
T25806_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_50445
RRM
314
384
LHLSGLPHDTTQSELESWFTQYGGRPIAFWTLRTPEGGKPSGSGFVVFGSHEEAAESLSMNGRALNDRAIE
estExt_Genewise1.C_50445
RanBP ZF
419
448
RPGDWTCPSCGFSNFQRRTACFRCSFPAMG
estExt_Genewise1.C_50445
RanBP ZF
505
536
RAGDWKCGNEGCGYHNFAKNVSCLRCGASRNN
Links
Other
RanBP ZF,RRM
family RBPs
Other
Mycosphaerella fijiensis
RBPs
51 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pm.C_chr_80348
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_80348
N
0.985
BC1G_02626
Botrytis cinerea
BC1G_02626
N
0.895
estExt_fgenesh1_pm.C_30636
Myceliophthora thermophila
estExt_fgenesh1_pm.C_30636
N
0.887
SS1G_01772
Sclerotinia sclerotiorum
SS1G_01772
N
0.887
estExt_fgenesh1_pg.C_10521
Neurospora tetrasperma
estExt_fgenesh1_pg.C_10521
N
0.880
GLRG_04960
Colletotrichum graminicola
GLRG_04960
N
0.880
estExt_Genewise1.C_11720
Neurospora discreta
estExt_Genewise1.C_11720
N
0.880
VDAG_01381
Verticillium dahliae
VDAG_01381
N
0.880
NCU06684
Neurospora crassa
NCU06684
N
0.880
e_gw1.4.1358.1
Trichoderma virens
e_gw1.4.1358.1
N
0.872
estExt_fgenesh1_pm.C_10481
Trichoderma reesei
estExt_fgenesh1_pm.C_10481
N
0.872
FOXG_02027
Fusarium oxysporum
FOXG_02027
N
0.872
estExt_fgenesh2_pm.C_20549
Thielavia terrestris
estExt_fgenesh2_pm.C_20549
N
0.872
estExt_Genewise1.C_sca_6_chr9_2_00515
Nectria haematococca
estExt_Genewise1.C_sca_6_chr9_2_00515
N
0.872
GSTUMT00003821001
Tuber melanosporum
GSTUMT00003821001
N
0.872
estExt_Genewise1Plus.C_130308
Cryphonectria parasitica
estExt_Genewise1Plus.C_130308
N
0.872
ACLA_003080
Aspergillus clavatus
CADACLAG00000382
N
0.865
CHGG_07745
Chaetomium globosum
CHGG_07745
N
0.865
NFIA_039950
Neosartorya fischeri
CADNFIAG00002962
N
0.865
ATEG_09171
Aspergillus terreus
CADATEAG00003372
N
0.865
AO090102000274
Aspergillus oryzae
CADAORAG00009617
N
0.865
MGG_07327
Magnaporthe oryzae
MGG_07327
N
0.865
fgenesh1_pm.00866_#_655
Aspergillus carbonarius
fgenesh1_pm.00866_#_655
N
0.865
Pc21g14870
Penicillium chrysogenum
Pc21g14870
N
0.865
An02g10780
Aspergillus niger
CADANGAG00002596
N
0.865
Pa_2_11350
Podospora anserina
Pa_2_11350
N
0.865
AFLA_003900
Aspergillus flavus
CADAFLAG00010456
N
0.865
AFUA_5G02160
Aspergillus fumigatus
CADAFUAG00002676
N
0.865
PMAA_081320
Penicillium marneffei
PMAA_081320
N
0.857
ANIA_08055
Aspergillus nidulans
CADANIAG00004081
N
0.857
BDBG_01534
Blastomyces dermatitidis
BDBG_01534
N
0.842
UREG_03978
Uncinocarpus reesii
UREG_03978
N
0.842
AB01016.1
Alternaria brassicicola
AB01016.1
N
0.842
CPSG_00638
Coccidioides posadasii
CPSG_00638
N
0.842
CIMG_06432
Coccidioides immitis
CIMG_06432
N
0.842
estExt_Genewise1.C_70493
Cochliobolus heterostrophus C5
estExt_Genewise1.C_70493
N
0.842
SNOG_15524
Stagonospora nodorum
SNOG_15524
N
0.842
EAT77189.2
Phaeosphaeria nodorum
EAT77189.2
N
0.842
PABG_00314
Paracoccidioides brasiliensis
PABG_00314
N
0.835
PTRG_11004
Pyrenophora tritici repentis
PTRG_11004
N
0.835
TRV_00689
Trichophyton verrucosum
TRV_00689
N
0.827
ARB_00799
Arthroderma benhamiae
ARB_00799
N
0.827
MCYG_02047
Microsporum canis
MCYG_02047
N
0.827
MGYG_04027
Microsporum gypseum
MGYG_04027
N
0.827
TEQG_06114
Trichophyton equinum
TEQG_06114
N
0.827
TERG_04360
Trichophyton rubrum
TERG_04360
N
0.827
TESG_06793
Trichophyton tonsurans
TESG_06793
N
0.827
FVEG_05191
Fusarium verticillioides
FVEG_05191
N
0.752
YALI0F21835g
Yarrowia lipolytica
YALI0F21835g
N
0.729
CPAG_02028
Candida parapsilosis
CPAG_02028
N
0.716
PGUG_04435
Candida guilliermondii
PGUG_04435
N
0.707